BAC Information

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BAC

Clone NameMSMg01-191O05
Chromosome7 (Build37)
Map Location 123,126,457 - 123,126,694
singlet/doubletsinglet
Overlap geneSox6
Upstream geneLOC668472, LOC100042779
Downstream gene1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191O05.T7 (MSMg01no191_o05.b1)MSMg01-191O05.TJ (MSMg01no191_o05.g1)
ACCAG381745AG381746
length832705
length of high quality
(start - end)
283 (45 - 327)278 (77 - 354)
definitionCHROMAT_FILE: MSMg01no191_o05.b1 PHD_FILE: MSMg01no191_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:39 2005CHROMAT_FILE: MSMg01no191_o05.g1 PHD_FILE: MSMg01no191_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACTCCCAGAATAAACTATACTCCTGGCCCTCAAATGAGCACCATC
CTTTTTACAAACAAGCTCCACTGACACTGGCAAAATGGTTTCAAGAGCAA
GAGACACAAGCAAAGATTCACCCAGAAACCTTCAACTGGAGCTTGGACAC
CATCATGACCTTTCATCCTACGAGCAAAACCTTCACAAAGCTACAGGCAA
GGCACTAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGATATATTAGCCCCCCCCCCCGCGCTN
NNAAAAANAAAATTTTTTTTTTTCCCCCCCCCCCCCCCGAGAAAGAAGAG
AGGAAACAGCGAGGCGCTGGGNNNCCNCAAAAAAAAAAAAAAAAAAATTG
CGGGGGGCGGGGGGGCCTATTTTACCATCATCATTCTACCGAATGACATA
TATTTTAACTCCGCTCTTTTTTACTCTCCCCCACGTCCGTCACTCTTATT
TCCCACTTTTGCCCCCTCCTAAACCACCTACACCATTTACCCAGGACAAT
ATGTTTTTCCCCTTTATCTTTAAACCCCATTTAAACAATTATCTCCAATT
TTCACGATCTCACGCAATCATTCCATTCTCATTTATTCTCCCCGATGTCC
CCCCACTCCAAATTCTTAAATTATGTGCACAAAACAACCGAATATCCCCG
CATATGATAGACATTAAGTCAAACACAAAACACCCCCACATTCGAAGCTT
TTCTCCTCACTTCTACCGCACACCACACCCCC
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCTCCTCTCAATGACACTTT
CTACCTTCATGTCATAGATATGCACACACACACCCATAATTTAGTCGAGG
TTATATGTATAAGAGGAAATGTGATATTTGTTTTATGAGTTTGGCTTATT
ACTTCATGATTTTCAGTAATATCTATTTTTCTGAGGATGCTATGATTTCA
ATGTTCTTTGTAGTACAACAGAATTCCATAGTGCATAAAACTGTGTTTTT
TAGTCTTTCTATCTGATGATGGGCATCTAGGCTGCTATGACTAGAAAAGC
AGTTATTGTTTTATGCCCCCCCCCCCCTGTGGGACACTGACTTAGAATCC
CTAGAGTAGTAACCTAGGAAGACTATAGCTGGTCATACTGTCTTTTTAGT
TTTAAGTTTTTGAGGAACCTCCATACTAACTTTCATAATGGTTGCACTAA
TTTTATTCTAACTAGTGATATATAAAGTGACATCATATAAGGCTTCTTTG
ATTTCTTGAAGATGGACATTTTACCTAAGCTGAGATGGAACTTCCGTGTA
GTTTTGATTTGCCTTTGAAGATTATCTTTCTCAATGAAAGTGAAAAATGT
CCCCGCCTGTGATTCACAGAATTACCGCAAATATTCCGGTACGCCCTTTT
AATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_o05.b1 MSMg01no191_o05.b1 CHROMAT_FILE:
MSMg01no191_o05.b1 PHD_FILE: MSMg01no191_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:39 2005
         (283 letters)



>mm_chr7_123126253_123126935
          Length = 683

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactcccagaataaactatactcctggccctcaaatgagcaccatcctttttac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactcccagaataaactatactcctggccctcaaatgagcaccatcctttttac 264

                                                                       
Query: 65  aaacaagctccactgacactggcaaaatggtttcaagagcaagagacacaagcaaagatt 124
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 aaacaagctccactggcactggcaaaatggtttcaagagcaagagacataagcaaagatt 324

                                                                       
Query: 125 cacccagaaaccttcaactggagcttggacaccatcatgacctttcatcctacgagcaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacccagaaaccttcaactggagcttggacaccatcatgacctttcatcctacgagcaaa 384

                                                                     
Query: 185 accttcacaaagctacaggcaaggcactaatgagagagagagagagagagagagagag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accttcacaaagctacaggcaaggcactaatgagagagagagagagagagagagagag 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)