Query= MSMg01no192_k17.b1 MSMg01no192_k17.b1 CHROMAT_FILE:
MSMg01no192_k17.b1 PHD_FILE: MSMg01no192_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:21 2005
(337 letters)
>mm_chr7_79870911_79871647
Length = 737
Score = 588 bits (304), Expect = e-172
Identities = 328/336 (97%)
Strand = Plus / Plus
Query: 1 ggatccagtaataaatattaactcaatttcctggccgcctcgctggtacgaaaggcctgt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ggatccagtaataaatattaactcaatttcctggccgactcgctggtacgaaaggcctgt 260
Query: 61 tgattcctgggctctgcagtggcatctccagcactctaggatttcagtgaggtgcagttc 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tgatagctgggctctgcagtggcatctccagcactctaggatttcagtgaggtacagttc 320
Query: 121 ctgctaactcaccacacgctaacacagggaccagatgtggagcacatcaccaagggccag 180
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ctgctaactcactgcacgctaacacagggaccagatgtggagcacatcgccaagggccag 380
Query: 181 aagcagagactgcgcagcctggaggtgcacatcatacaaggtcccagagtattacaagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcagagactgcgcagcctggaggtgcacatcatacaaggtcccagagtattacaagtg 440
Query: 241 gccaattagttccctcctagtagcatgtaaataccatcaaacttcatggtcggcatatgc 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 gccaattagttccctcctagtagcatgtaaataccatcaaacttcagggtcggcatatgc 500
Query: 301 ccccttccccgtggcatcctgtccacacattcttaa 336
||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccccttccccgtggcatcctgtccacacattcttaa 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no192_k17.g1 MSMg01no192_k17.g1 CHROMAT_FILE:
MSMg01no192_k17.g1 PHD_FILE: MSMg01no192_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:21 2005
(486 letters)
>mm_chr7_79932793_79933676
Length = 884
Score = 897 bits (464), Expect = 0.0
Identities = 480/486 (98%), Gaps = 2/486 (0%)
Strand = Plus / Minus
Query: 1 ttgtcccagggtgtctctgtcaaaagtgagaaattgatggatgggaacaaatgaggaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttgtcccagggtgtctctgtcaaaagtgagaaattgatggatgggaacaaatgaggaaga 557
Query: 61 gcccctccccggaccctcccatggaaaagtgagaagcattcgaggctcctgccaagaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gcccctccccggaccctcccatggaaaagtgagaagcattcgaggctcctgccaagaggc 497
Query: 121 cctaagggaaattctttcccaagataaaatttattgactaaaaataactcagtctctgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cctaagggaaattctttcccaagataaaatttattgactaaaaataactcagtctctgtc 437
Query: 181 agagataatctgaaaagcaatactgtgtggtgcatatatcacaaagtcccctgggagtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agagataatctgaaaagcaatactgtgtggtgcatatatcacaaagtcccctgggagtat 377
Query: 241 tttcaagatgaatacctgaaagaataaattttccctatttttctaactgaaacttgtttt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 376 tttcaagatgaatacctgaaagaataaattttccctatttttctaactgaaatttgtttt 317
Query: 301 ttttttccatgtaaagtaatacacaatcattgttcaaggatatgaaaatactaaaattaa 360
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tttt--ccatgtaaagtaatacacaatcattgttcaaggatatgaaaatactaaaattaa 259
Query: 361 aacaataacaaaaataaagcagaaaaatattttgctaaaccagacaactcttaacattac 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 258 aacaataacaaaaataaagcagaaaaatattttgttaaaccagacaactcttaacattac 199
Query: 421 acaaacacacacatatgtacacacacacacacatatatatatatatgtgtgtgtgtgtgt 480
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 198 acaaacacacacatatgtacacacacacacacatatatatatatatatatgtgtgtgtgt 139
Query: 481 gtgtgt 486
||||||
Sbjct: 138 gtgtgt 133
Score = 74.2 bits (38), Expect = 2e-17
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 439 acacacacacacacatatatatatatatgtgtgtgtgtgtgtgtgt 484
|||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 135 acacacacacacacatatatatatatatatatgtgtgtgtgtgtgt 180
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 486
Length of database: 884
Length adjustment: 10
Effective length of query: 476
Effective length of database: 874
Effective search space: 416024
Effective search space used: 416024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
