BAC Information

Click to search

BAC

Clone NameMSMg01-193F17
Chromosome7 (Build37)
Map Location 104,530,326 - 104,530,551
singlet/doubletsinglet
Overlap geneAlg8
Upstream geneOdz4, LOC666858, Nars2, Gab2, LOC100040457, Usp35, EG622320
Downstream geneNdufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193F17.T7 (MSMg01no193_f17.b1)MSMg01-193F17.TJ (MSMg01no193_f17.g1)
ACCAG382698AG382699
length757755
length of high quality
(start - end)
---226 (74 - 299)
definitionCHROMAT_FILE: MSMg01no193_f17.b1 PHD_FILE: MSMg01no193_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:44 2005CHROMAT_FILE: MSMg01no193_f17.g1 PHD_FILE: MSMg01no193_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAATCTTTTTGCGCTACTTAACAGGACTCTGTCTCAAAAGCAATC
TGAGCTGCACTCGAACAATCACCACCATCATCAACAATTAACCTAATCTC
ACTTCAAACAGAAAAATGGAGTTGTGTTGAATATGGCTTTGAGTATATAT
ATGACATTGTTAGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCTCCTCCCCCCCAAAAAAAAAAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTGCTCCAA
GCGCTCGCTTTTCGCCTTTTACAAGTTCGCCTTTTCTTTTTCTATCCCCT
CCCATTTCCCTCTTCCTTCCCTTCACATTTTTTTCACCCCCTCCCCCCCT
CTTTTCCCTTTTCTCTTATTCTTCCTTATCCCTTTTCCCCACCTTTTCCC
TTTTCTTTCTTTTCCCCCCTCTTTTTTTTTTTTCTCCTCTTTTCTTTTTT
TTTTCACTTCCCTTTTTTCCCTCTTTTCCCCCCCTTTTTTCCACCTTTCC
TTTTTTT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTACAGAGGCTCCTGGTATCAATGAA
GTTGTTGATTCCAGGTGCCGTGTTTCATTCTGTTTTTACAGAAGATCCCC
TAAGGCTTAGTTACAGCTCTTAAAGTGTAGCTACTGGTCTGGAGAGAGGT
CTCAGCAGCTAATAGCACTGGCTGCTCTCTCAGAGGACCTGTTTCAATTC
CCAGCACCCACATGGCAGCCCACAACCATCTGTAACTTCAGTTCCAGAGC
CTCGGATGCACCTCCTCTGGTTTCTGCAGTCTTTGCACACATTTGCACAA
ACATCTATTTTTTTTTCTCCCCCCCCACGCCCCCACAGTTAAAATTTTAG
TTGGACGCCGATCCCCCTCCCACGAAAAAAAATATACTCCGGACGCTGTG
TCGACTACCCATCCCTTTCCTCTCTGGCGTTTGACACCCACCCTGAATAA
TCTTATCTCACCCCCCGGCGCTCTTTCCCGTTCCATTTTTCCCTTCCCCC
TCCCCCCCCCCCTCTTCCCCCTTCCCCCCCCCTCTTTTTTTTCCCCCTTT
CTCTTCCCTCCTTCCTCCTCCCCCCCCCTCCCCTTTCTCCCCCCCCTTTT
TCTCTCTCTCTTTTCCCCTTTTCCCTCCCTCTCCTCTCCTCCCCCTCCTC
TTTCTTTCCCCTCCATCTTCCTCTCTCCCCTCCTTCTCTTTACCCTTCTC
CTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_f17.g1 MSMg01no193_f17.g1 CHROMAT_FILE:
MSMg01no193_f17.g1 PHD_FILE: MSMg01no193_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:44 2005
         (226 letters)



>mm_chr7_104530126_104530751
          Length = 626

 Score =  368 bits (190), Expect = e-106
 Identities = 217/226 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttacagaggctcctggtatcaatgaagttgttgattccaggtgccgtgtttcattctgt 60
           ||||||||||||||||||  || ||||||||| |||||||||||||||||||||||||||
Sbjct: 201 cttacagaggctcctggtgccagtgaagttgtggattccaggtgccgtgtttcattctgt 260

                                                                       
Query: 61  ttttacagaagatcccctaaggcttagttacagctcttaaagtgtagctactggtctgga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ttttacagaagatcccctaaggcttagttacagctcttaaagtgtagctactgggctgga 320

                                                                       
Query: 121 gagaggtctcagcagctaatagcactggctgctctctcagaggacctgtttcaattccca 180
           ||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 321 gagaggtctcagcagttaatagcactggttgctctctcagaggacctgttttaattccca 380

                                                         
Query: 181 gcacccacatggcagcccacaaccatctgtaacttcagttccagag 226
           |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gcacccacatggcagcccacaaccgtctgtaacttcagttccagag 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)