Query= MSMg01no193_h19.b1 MSMg01no193_h19.b1 CHROMAT_FILE:
MSMg01no193_h19.b1 PHD_FILE: MSMg01no193_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:56 2005
(325 letters)
>mm_chr7_4612978_4613702
Length = 725
Score = 557 bits (288), Expect = e-163
Identities = 306/320 (95%), Gaps = 13/320 (4%)
Strand = Plus / Plus
Query: 6 ggaattcactgactctactcgactggctacacatgagccccaagggatcctctgtccctg 65
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggaattcactgactctactggactggctacacatgagccccaagggatcctctgtccctg 278
Query: 66 cttcctgcgctgtgaactcagctccttctgcttgcactgcaagcactttgccaactgacc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cttcctgcgctgtgaactcagctccttctgcttgcactgcaagcactttgccaactgacc 338
Query: 126 cgtgtcccctgcctcaaacacttgttcctatagcagtgtctgtagtcgtgagagactgga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cgtgtcccctgcctcaaacacttgttcctatagcagtgtctgtagtcgtgagagactgga 398
Query: 186 gacaaactatacttcctacaacagacaactacatcaggatttcaagtctgagaccacttt 245
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 399 gacaaactatacttcctacaacag-------------gatttcaagtctgagaccacttt 445
Query: 246 aagctaacacagtgaaaatgtaactaaaacattaagaagaggtagttaagtcaatgaggt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aagctaacacagtgaaaatgtaactaaaacattaagaagaggtagttaagtcaatgaggt 505
Query: 306 caaaaaggccatccctactc 325
||||||||||||||||||||
Sbjct: 506 caaaaaggccatccctactc 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_h19.g1 MSMg01no193_h19.g1 CHROMAT_FILE:
MSMg01no193_h19.g1 PHD_FILE: MSMg01no193_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:56 2005
(304 letters)
>mm_chr7_4770395_4771100
Length = 706
Score = 470 bits (243), Expect = e-137
Identities = 277/291 (95%), Gaps = 7/291 (2%)
Strand = Plus / Minus
Query: 1 agtacttgaggaggtcagaagagggtggaagatcccctagagctggagtggttgtgagct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 496 agtacttgaggaggtcagaagagggtggaagatcccctagagctggagtggttgtgcgct 437
Query: 61 gctcaatgtgggtgctgggtcttgcaagtggcccaggatgtcctcctacctaagtgctgg 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 436 gctcaatgtgggtgctgggtcttgcaagtggcccaggatgtcctcctgcctaagtgctgg 377
Query: 121 acatgccaaaaggtccatcattcaagtaattctgtttttttttttccccttctcttcttt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 376 acatgccaaaaggtccatcattcaagtaattctgttttttttttttcccttctcttcttt 317
Query: 181 cttt--aaaaaaaaaaagttttattaacaggggatagatagtaatatatacc-tttttct 237
|||| |||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 316 ctttaaaaaaaaaaaaagttttattaacaggg----gatagtaatatataccttttttct 261
Query: 238 ctttctttctttctttctttctttctttctttctttctttctccctttctt 288
||||||||||||||||||||||| ||| ||||||||||| || ||||||||
Sbjct: 260 ctttctttctttctttctttcttccttcctttctttcttccttcctttctt 210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 706
Length adjustment: 9
Effective length of query: 295
Effective length of database: 697
Effective search space: 205615
Effective search space used: 205615
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
