BAC Information

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BAC

Clone NameMSMg01-195H02
Chromosome7 (Build37)
Map Location 88,861,851 - 88,862,223
singlet/doubletsinglet
Overlap genenone
Upstream geneIqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2
Downstream gene2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195H02.T7 (MSMg01no195_h02.b1)MSMg01-195H02.TJ (MSMg01no195_h02.g1)
ACCAG383961AG383962
length717724
length of high quality
(start - end)
73 (383 - 455)373 (76 - 448)
definitionCHROMAT_FILE: MSMg01no195_h02.b1 PHD_FILE: MSMg01no195_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:40 2005CHROMAT_FILE: MSMg01no195_h02.g1 PHD_FILE: MSMg01no195_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTTTGCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAACCN
GAANNGGAANNNNANGTTCTTTCANCAGGAGAGAGGNNNAGNTNNNGNNG
NNNNTGGANNNGGNTCNNANNNNAGTTCNACCCNNNNTCNCNNAGNNANN
TGGGAANNGGNNGGNNGGGGGAAGNNNAAGGNNNNANAGNTGTTAAAGGN
TATTGTGGTANNAANTTGANNNTTTATNTATTTAATGTNNNATNTAATTA
TTAGTGATATTTTTTTTATTTTAATGNNTGGNTTNNAAGGTTTNTTGTAA
TTGTATAGTNTNTATNTAAAAGAAAGTTTTTTTTTTTTTTAAGGNAGNAA
NNNNGGGNNGNANGGAAAGATTAAAGCACTGTTCCTTTCCCCTTCAGGCA
AATTTGTACCCTAGCTCATTTAATCTCTCAGCGTGTTTTGGTTACATGTT
ACTCTAGAATAAATCATTCCAACATCTGGTGGTTATAAACAGTCATTACA
TCGACCTTAGAGCTGTGTGGTCTGAAGGGATCACCCAGTTGCTTGGTATA
GCGCTTATGCTCCATGACTGGATTTCCGATAACCCTTATGGTTGTGGTTG
GCCGTAGGGAGGACTGGATACCATCTGGTAGTCTCTTATGCGCTTAGAGG
TTCTTTCAGCGAGTTTGTTTTTTTGTTCAAGGATAGGAGCTTCCAGGGGC
TCTTAATTTTTTAGGAC
CTTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCGCGAAATTCTAAATTCAGTTTGTTCTCTAT
AGGAGACACTGGTGCTCTATGGATTGCTTGTATCAGGCTGGCAGCAACAG
AACAGTTAGGCACCTGTTTGTAAATTAGGACTCATCGGGATGGATCAGGT
TCAAGCAGGCAAGCCTAAGCTATGGGACCAGCCTTGGTGTCCATCAACAG
ATGAATGAGATGCATAGTGGGGGATTCAGCCAACCACACAGAGGAATGAA
CGCACATTTTCAGAGAAATGGATGGAACCGGTAATCACTGTGTTGAGCAG
AATAAATCAGACTGAGACAATACTGCTTGTTTTCTGATGTGTGGAATTTA
TAGTCAAACTATATAGTGCGCACATATGTGCTCATACACATCATGATATG
ACAGTAAAGCACGGCTATGCCAGGGATGAAAAGGTCTTATTGGAGAAAGG
AGAAGAACATATGTGAGAGTATAGGTAGTATACTATATACCACATGTATT
AATCAGACTAGATTGTAAATGTAGCTGTATGACATGAAAGCATAATTGGC
ATGTTTAGGGGTGAAGAAAAGGACTGGCCCTAGTGTACAAGGTGTAATGA
TACGGGGAGCACAACAAAGAGTCTTGTACTATGAAGACTACGACAGCCCT
CCCTTAACCTGACAATTGTGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_h02.g1 MSMg01no195_h02.g1 CHROMAT_FILE:
MSMg01no195_h02.g1 PHD_FILE: MSMg01no195_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:40 2005
         (373 letters)



>mm_chr7_88861651_88862423
          Length = 773

 Score =  683 bits (353), Expect = 0.0
 Identities = 368/373 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctaaattcagtttgttctctataggagacactggtgctctatggattgcttgtatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctaaattcagtttgttctctataggagacactggtgctctatggattgcttgtatca 260

                                                                       
Query: 61  ggctggcagcaacagaacagttaggcacctgtttgtaaattaggactcatcgggatggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctggcagcaacagaacagttaggcacctgtttgtaaattaggactcatcgggatggat 320

                                                                       
Query: 121 caggttcaagcaggcaagcctaagctatgggaccagccttggtgtccatcaacagatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggttcaagcaggcaagcctaagctatgggaccagccttggtgtccatcaacagatgaa 380

                                                                       
Query: 181 tgagatgcatagtgggggattcagccaaccacacagaggaatgaacgcacattttcagag 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagatgcacagtgggggattcagccaaccacacagaggaatgaacgcacattttcagag 440

                                                                       
Query: 241 aaatggatggaaccggtaatcactgtgttgagcagaataaatcagactgagacaatactg 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatggatggaaccgggaatcactgtgttgagcagaataaatcagactgagacaatactg 500

                                                                       
Query: 301 cttgttttctgatgtgtggaatttatagtcaaactatatagtgcgcacatatgtgctcat 360
           | ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 501 catgttttctgatgtgtggaatttatattcaaactatatagtgtgcacatatgtgctcat 560

                        
Query: 361 acacatcatgata 373
           |||||||||||||
Sbjct: 561 acacatcatgata 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)