Query= MSMg01no195_j03.b1 MSMg01no195_j03.b1 CHROMAT_FILE:
MSMg01no195_j03.b1 PHD_FILE: MSMg01no195_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:50 2005
(660 letters)
>mm_chr7_133307488_133308546
Length = 1059
Score = 1147 bits (593), Expect = 0.0
Identities = 622/632 (98%), Gaps = 1/632 (0%)
Strand = Plus / Minus
Query: 29 cctcaggatggaacctagggccatacagtgctaggcaaacggtctactattgagctctag 88
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1059 cctcaggatggaacctagggccatacagtgctaggcaaaccgtctactattgagctctag 1000
Query: 89 ctcttgttagattgtttgtttgtttgttttttggagacagggtcttgctgtatagtccag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 ctcttgttagattgtttgtttgtttgttttttggagacagggtcttgctgtatagtccag 940
Query: 149 gctgccctcaaatttatgatcttggtgctgcctctgttttcctagtgcctaggtgtctaa 208
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 939 gctgccctcaaatttatgatcttggtgctgcctctgttttcctagtgcctagatgtctag 880
Query: 209 gtgtgtgccaccattcctagtgatggctttcttttttcactggatttcttacctgtgctt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gtgtgtgccaccattcctagtgatggctttcttttttcactggatttcttacctgtgctt 820
Query: 269 tctttcctttgaataaagaaaggagatttaagatggatttttctatattgtagaggatct 328
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 819 tctttcctttgaataaagaaaggagatttaagatgga-ttttctatattgtagaggatct 761
Query: 329 gaccatatgtgaggagcacagaggcatttcatatctaaaggaaagtgagtatctgagttg 388
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 760 gaccatatgtgaggagcacagaggcatttcatatctaaaggaaagtgagtaactgagttg 701
Query: 389 gagagatggacatggatggctcctaaaagcacttacaggagaacaaggttcattcagttc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gagagatggacatggatggctcctaaaagcacttacaggagaacaaggttcattcagttc 641
Query: 449 ccagtattatcactggcctcagcaggcacttggacacttgtgcatataaattcatatagg 508
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 640 ccagtattatcactggcctcagcagtcacttggacacttgtgcatataaattcatatagg 581
Query: 509 tgggcacacctgtgcacacataaccgcataacacacacatgcaccacacatatacacaaa 568
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 580 tgggcacacctgtgcacacataaccacataacacacacatgcaccacacatatacacaaa 521
Query: 569 ccttgaaagtgaatgttgccaagtagatcatttggcagaataggtttattcaaccctgan 628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccttgaaagtgaatgttgccaagtagatcatttggcagaataggtttattcaaccctgaa 461
Query: 629 agatttaagtgcttatgagctgcggagatggc 660
||||||||||||||| |||||| |||||||||
Sbjct: 460 agatttaagtgcttaggagctggggagatggc 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1059
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1049
Effective search space: 681850
Effective search space used: 681850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_j03.g1 MSMg01no195_j03.g1 CHROMAT_FILE:
MSMg01no195_j03.g1 PHD_FILE: MSMg01no195_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:50 2005
(563 letters)
>mm_chr7_133185640_133186602
Length = 963
Score = 1035 bits (535), Expect = 0.0
Identities = 556/563 (98%)
Strand = Plus / Plus
Query: 1 tgaatatcagcagtaagctggaggcttgtctcctagacccttcaaaaaaatatcagtctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaatatcagcagtaagctggaggcttgtctcctagacccttcaaaaaaatatcagtctg 260
Query: 61 caacagccagacgttagctacccaagatatgctgtgcaatcctgagttagtgttggagat 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 caacagccagacgttagctacccaagatatgctgtgcaatcgtgagttagtgttggagat 320
Query: 121 gataagcttgtggtttcttgttaaggcagaaaaggaggcaggctaatacactatgaagta 180
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 gataagcttgtggttacttgttaaggcagaaaaggaggcaggctaatacaccatgaagta 380
Query: 181 cccatcaagggggtgtggactgatgggccacaccctccagttagaagcctggttgacatt 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 cccatcaagggggtgtggactgatgggccacgccctccagttagaagcctggttgacatt 440
Query: 241 agtgccccctagaggcaggaagcctctctgtaaccacagagagcccttccccctaccccc 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 agtgccccctagaggcaggaagcctctctgtaaccacagagagcacttccccctaccccc 500
Query: 301 agaacacacccaggaacaactgggatccacacatctgcccttggagctgccatggtatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaacacacccaggaacaactgggatccacacatctgcccttggagctgccatggtatct 560
Query: 361 ttaggcaaagagaaaagctaaagagggtttgcctggttagtgggatacctgagtgaccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaggcaaagagaaaagctaaagagggtttgcctggttagtgggatacctgagtgaccct 620
Query: 421 gggaggtaagggagccccagatcccatccgacacatcctctagtactctcaagaccctga 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggaggtaaggtagccccagatcccatccgacacatcctctagtactctcaagaccctga 680
Query: 481 ctgcacaggctaagtaatgctccctgtgcccagaggctccaccttaacccctatagtcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgcacaggctaagtaatgctccctgtgcccagaggctccaccttaacccctatagtcct 740
Query: 541 agtagttccttatagcacacagc 563
|| ||||||||||||||||||||
Sbjct: 741 agcagttccttatagcacacagc 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
