BAC Information

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BAC

Clone NameMSMg01-195K17
Chromosome7 (Build37)
Map Location 84,643,425 - 84,643,739
singlet/doubletsinglet
Overlap genenone
Upstream geneEG244071
Downstream geneA330068G13Rik, Ntrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195K17.T7 (MSMg01no195_k17.b1)MSMg01-195K17.TJ (MSMg01no195_k17.g1)
ACCAG384094AG384095
length725728
length of high quality
(start - end)
319 (46 - 364)284 (81 - 364)
definitionCHROMAT_FILE: MSMg01no195_k17.b1 PHD_FILE: MSMg01no195_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:57 2005CHROMAT_FILE: MSMg01no195_k17.g1 PHD_FILE: MSMg01no195_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAGAGACATGAATTAATGTCTTTACTTCCTTAAGGTATTTTTG
TTACTCTGTACTGACATTAACACCAAGAAAAGGAAATTGCAAACTCATTT
CTTCTTCCTTGTATGCTAGGGTGAAGCAGTCTAAGAAACAGTCAGATAGT
TCACCTACTCCTGGAATATCTTCAGTGGGTTTGGCATACTGATTTGTATA
CAGTGGTGGAGGCAGGGGAGTCTCCAACATGTTGCTCCTCAGGAAGTCAC
CCTTGCTTTTTTAACCATTTCCTCTTGAATCCTGACCTTAGCTAGACTCT
TAAAGTATGTCCTCGTTGTCTTTTCTCCCCACTAGACTACCTGTGTAGCG
GGTGCTTTACAACTCCATGTCCAGAAAAGATCATTGACAAAATCCCATGC
ATTAGTTTTCTACGACTGCACTAAAACTGACCACAAACTTAGCACAAAAG
ACAACATTCATGAAGCTAGCAAAATCACTCAGCCATTAAGAACAGTTCTT
ATTCTAGAGGTTCCATGATCTGTGCCTAGCACACAAGGTGGGCAGTTTAC
AACAACCTGTAACCCTTGCGCTAGGGGACCTAATGTCCTCTTCTGGTCTC
TGCAGGGACATGCCCACACCCAGCCCTGAGGCACACATATAAATTAAAGT
AGAATGAATCGTTTAAATCAACACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTAAGGAAACAGGAGCTG
ATGCAGAGACCATGGAGGGATGTTACTTACTGGCTTGCTTCCACTGACTT
GCTCAGTCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTC
CCACCCACAAGAGGCCTTTCCCCCTTGATCACTAATGAGAAAATGCCCCA
CAGCTGGATCTTATGGAGGCATTTCCCCAACTGAAGCTCTTTTCTCTGTG
ATAACTGCAGCCTGTGTCAAGTTGACACAAAAAACCAGCCAGTACACTTT
CTTTTCAGAGGAGATTTTTTAACTACCCACGCTCTGAATTCAGCAGCAAT
GAAAAAAATACTTCTAAGCGTTCATTAAACAAATCTTTTATTTCCCCCTT
TAGCTGTGTTTAATTGTTCAAGGTAAACAAGTGAAAGAAGAAACCTATCT
GTATTCTATTTCTGGAATTGAGGTATATGGAGCTAGGAGTCACCCAAAGA
TAGAGAAAGATTGGTATGATAGACCACAGGAAACTTCTGGAAGATTAATT
TTGTGAGTAGATGATACATTTGATTTAAGGGTACAGCAGAGTGGAGTATG
ATGTCCCTGATAAACATGACCAATAGGCAGTTGGAGACAGTGAACAGGAG
TTCTATGATTGATGAAGGTTTGACTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_k17.b1 MSMg01no195_k17.b1 CHROMAT_FILE:
MSMg01no195_k17.b1 PHD_FILE: MSMg01no195_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:57 2005
         (319 letters)



>mm_chr7_84643221_84643939
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcagagacatgaattaatgtctttacttccttaaggtatttttgttactctgt 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcagagacatgatttaatgtctttacttccttaaggtatttttgttactctgt 264

                                                                       
Query: 65  actgacattaacaccaagaaaaggaaattgcaaactcatttcttcttccttgtatgctag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actgacattaacaccaagaaaaggaaattgcaaactcatttcttcttccttgtatgctag 324

                                                                       
Query: 125 ggtgaagcagtctaagaaacagtcagatagttcacctactcctggaatatcttcagtggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtgaagcagtctaagaaacagtcagatagttcacctactcctggaatatcttcagtggg 384

                                                                       
Query: 185 tttggcatactgatttgtatacagtggtggaggcaggggagtctccaacatgttgctcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttggcatactgatttgtatacagtggtggaggcaggggagtctccaacatgttgctcct 444

                                                                       
Query: 245 caggaagtcacccttgcttttttaaccatttcctcttgaatcctgaccttagctagactc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggaagtcacccttgcttttttaaccatttcctcttgaatcctgaccttagctagactc 504

                          
Query: 305 ttaaagtatgtcctc 319
           |||||||||||||||
Sbjct: 505 ttaaagtatgtcctc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)