BAC Information

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BAC

Clone NameMSMg01-196F16
Chromosome7 (Build37)
Map Location 84,063,600 - 84,064,218
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC434200, EG244071
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196F16.T7 (MSMg01no196_f16.b1)MSMg01-196F16.TJ (MSMg01no196_f16.g1)
ACCAG384497AG384498
length737713
length of high quality
(start - end)
313 (58 - 370)618 (76 - 693)
definitionCHROMAT_FILE: MSMg01no196_f16.b1 PHD_FILE: MSMg01no196_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:52 2005CHROMAT_FILE: MSMg01no196_f16.g1 PHD_FILE: MSMg01no196_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCTCTATATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTCAACTGAGGAAACTCAAATGGCAGAGAAGCCC
CAAAAGAAATGTTCAACATCCTTATCCATCAGGTAAATGCAAATCCAAAT
GACCCTGAGATTCCACCTGATACCAGTCAGAATGACTAAGATTAGAAACT
CGGGTGACAGCAGATGCTAGTAAGGATGTGGAGAAAGAGGAACACTCTTC
CATTGCTGGTGGGATTGCAAGCTGGTAAAACCACTTTGGAAATCAGTCTG
GCAGTTTCTTAGAAAACTGGATATAGTGCTATATGAGGAGTTGGCTGTAC
CACTCCTGGGCATTTACTCTTTTTATTCTCCCCCACGCCCTAAGGTCATA
TGCTCTTCTATGTTCATAGCAGCCATATTTATAATAACCAGAACCTGGAA
ACAACCCAGATGTCCCTCAACAGAGGAATGAATACATAAAATATATTTAC
ACAATGGAATACTACACAGCTATTAAAAACAAGGACTTCATGAAATTTGC
TGCAAGTTGGATGGAACTTGAAAATATCATTCTGAGTGACGCAACTCTGT
CACAAAAGAACACACACACTATGCACTCACTGATAAGTGGCTATTAACCC
AAAAGTTCGGAATACCCAAGATACAATTCACAGATCATATGAATCCCAAG
AAGAAAGACCAAAGTGTGGATGCTTCAGTGATTTTTA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGGGCTTCAAAGTAGAATATGAAATT
TAATGTGGCTAATTGATGCACTTGGGTAGAAATAATGCCAGGCTAAGTAC
AGTTTAAATGGTGCTTAATTAGTTAATATGGCAAAGAAAAAAAATCCTTG
CTTGCTCCAGGAATGAAATTTATATTTTGGGCAAGGTACAAGAGTCATGG
AAAGAGCTGAGACACTGTCAGCCTCTGTTCAGAGACCATACTATTTGTCC
CAGGATACATGCCTTTTGTAAAGCACTGATTATAACATGCCAAGACACCT
GGTCCAATTCTGGACTCATTACGCAACAAAAAGAGGGGAAGCCTATTTCC
AGGAAGTAGACTTGTCTGCCAAGAGTGTGAAGGCTGTTCAGTCAATGCAG
ACAGCAGGAAGGTCTGGAGCTGCAGCGGAGTGTCCTGGCTGTGATCCCTA
AAGACGCCCTTGACTATACCCTCTCCTCCAAGCTGCTGTCCTGAGTGGGA
GTTCTATTCTCCTCAAAAGAGCCCAGTGGTATCTGCATAACATGATTCTA
ACAGATACCCCACCCCTATGGGACAGTAATGTAAATCACAGCCCAAACTC
ACATGAGATACAATTGCTTTGATATGGACCATGCTCCTGTAGGTCTTAAA
CTTATTCTCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_f16.g1 MSMg01no196_f16.g1 CHROMAT_FILE:
MSMg01no196_f16.g1 PHD_FILE: MSMg01no196_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:52 2005
         (618 letters)



>mm_chr7_84063400_84064418
          Length = 1019

 Score = 1122 bits (580), Expect = 0.0
 Identities = 610/620 (98%), Gaps = 3/620 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggcttcaaagtagaatatgaaatttaatgtggctaattgatgcacttgggtagaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggcttcaaagtagaatatgaaatttaatgtggctaattgatgcacttgggtagaaataa 260

                                                                       
Query: 61  tgccaggctaagtacagtttaaatggtgcttaattagttaatatggcaaagaaaaaaaa- 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tgccaggctaagtacagtttaaatggtgcttaattagttaatatggcaaagaaaaaaaaa 320

                                                                       
Query: 120 tccttgcttgctccaggaatgaaatttatattttgggcaaggtacaagagtcatggaaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttgcttgctccaggaatgaaatttatattttgggcaaggtacaagagtcatggaaag 380

                                                                       
Query: 180 agctgagacactgtcagcctctgttcagagaccatactatttgtcccaggatacatgcct 239
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgagacactgtcagcctgtgttcagagaccatactatttgtcccaggatacatgcct 440

                                                                       
Query: 240 tttgtaaagcactgattataacatgccaagacacctggtccaattctggactcattacgc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 tttgtaaagcactgattataacatgccaagacacctggtccaattctggactcattaggc 500

                                                                       
Query: 300 aacaaaaagaggggaagcctatttccaggaagtagacttgtctgccaagagtgtgaaggc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaaaaagaggggaagcctatttccaggaagtagacttgtctgccaagagtgtgaaggc 560

                                                                       
Query: 360 tgttcagtcaatgcagacagcaggaaggtctggagctgcagcggagtgtcctggctgtga 419
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 tgttcagtcaatgcagacagcaggaaggtctggagctgcagcagagtgtcctggctgtga 620

                                                                       
Query: 420 tccctaaagacgcccttgactataccctctcctccaagctgctgtcctgagtgggagttc 479
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccctaaagactcccttgactataccctctcctccaagctgctgtcctgagtgggagttc 680

                                                                       
Query: 480 tattctcctca-aaagagcccagtggtatctgcataacatgattctaacagataccccac 538
           |||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattatcctcagaaa-agcccagtggtatctgcataacatgattctaacagataccccac 739

                                                                       
Query: 539 ccctatgggacagtaatgtaaatcacagcccaaactcacatgagatacaattgctttgat 598
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccctctgggactgtaatgtaaatcacagcccaaactcacatgagatacaattgctttgat 799

                               
Query: 599 atggaccatgctcctgtagg 618
           ||||||||||||||||||||
Sbjct: 800 atggaccatgctcctgtagg 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space:   613472
Effective search space used:   613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)