Query= MSMg01no196_f21.b1 MSMg01no196_f21.b1 CHROMAT_FILE:
MSMg01no196_f21.b1 PHD_FILE: MSMg01no196_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:53 2005
(305 letters)
>mm_chr7_107029710_107030415
Length = 706
Score = 420 bits (217), Expect = e-122
Identities = 289/333 (86%), Gaps = 34/333 (10%)
Strand = Plus / Plus
Query: 4 ggaattcttcc--agtcagttttggaaaacttagctttgctgtgatttgattttgtgttt 61
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttccagagtcagttttggaaaacttagctttgctgtgatttgattttgtgttt 263
Query: 62 acaaatctgaaatccattgaccaggaccccagccccagcagccagaaggcatgctttttt 121
||||| |||||| || |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 acaaacctgaaaaccgttgagcaggaccccagccccagcagccagaaggcatgctttctt 323
Query: 122 gcctgtgttctgc--gaggccttctgctggctctaggcctcgtccaaataccttgccctg 179
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 gcctgtgttctgctt---gccttctgctggctctaggcctcatccaaataccttgccctg 380
Query: 180 aggataaagtttctcccactgtaaaatctgggctggctctaacattctgcaacctatgat 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 aggataaagtttctcccactgtaaaatctgggctggctctaacattctgcaacctacgat 440
Query: 240 cctacaattgtttatttctttg---------------------------gatccaacatt 272
|||||||||||||||||||||| |||||||||||
Sbjct: 441 cctacaattgtttatttctttgagctactcctcatggaaagcaaatttggatccaacatt 500
Query: 273 aaatagtcaaagtagccagaataaaatgtgtgt 305
|||||||||||| ||||||||||| || |||||
Sbjct: 501 aaatagtcaaagcagccagaataagatttgtgt 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 706
Length adjustment: 9
Effective length of query: 296
Effective length of database: 697
Effective search space: 206312
Effective search space used: 206312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_f21.g1 MSMg01no196_f21.g1 CHROMAT_FILE:
MSMg01no196_f21.g1 PHD_FILE: MSMg01no196_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:53 2005
(288 letters)
>mm_chr7_107175146_107175832
Length = 687
Score = 480 bits (248), Expect = e-140
Identities = 278/288 (96%), Gaps = 1/288 (0%)
Strand = Plus / Minus
Query: 1 cacagtataggaaatcaaaaaactctaggctccacttagagacatggggtttttaagaaa 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 487 cacagtataggaaat-aaaaaactctaggctccacttagagacatggggtttttaagaga 429
Query: 61 ggcctcattccataactcctggaatgcaaggtccttgctcccaggtcctattctccccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggcctcattccataactcctggaatgcaaggtccttgctcccaggtcctattctccccct 369
Query: 121 ccccctgccctcctgcccatccagaccagatctaggagggctgagacacctaagtgtggg 180
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 368 ccccctgccctcctgcccatccagaccagatctaggagggctgagacaccgacgtgtggg 309
Query: 181 tggggatgacagcctatggggcagaaactctgcggctcagtttgggaactgtgaggctcc 240
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 308 tggggatgacagcctatggggcagaagctctgcggctcagtttgggaactgggaggctcc 249
Query: 241 aggtcacagaggtggtaatgacagggctggggacaagaagaagagcct 288
||| |||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct: 248 aggccacagaagtgggaatgacagggctggggacaagaaaaagagcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space: 189162
Effective search space used: 189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
