BAC Information

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BAC

Clone NameMSMg01-196H04
Chromosome7 (Build37)
Map Location 134,239,129 - 134,239,444
singlet/doubletsinglet
Overlap genenone
Upstream geneXpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606
Downstream geneQprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196H04.T7 (MSMg01no196_h04.b1)MSMg01-196H04.TJ (MSMg01no196_h04.g1)
ACCAG384559AG384560
length785804
length of high quality
(start - end)		321 (50 - 370)75 (70 - 144)
definitionCHROMAT_FILE: MSMg01no196_h04.b1 PHD_FILE: MSMg01no196_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:00 2005CHROMAT_FILE: MSMg01no196_h04.g1 PHD_FILE: MSMg01no196_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTAAGTCAAAGCTAAGCTTGTATGTTGAGACAGACATTCCTT
ACTTAAGCTTTGTAATTAGGGGCTGTGGGCTCAGCTTTGTCAGGACTGGA
TCAGAGGGAGACTACTAAGATCAAGATTGAGGGCACTCTAATTTGGATTT
TTTTTTTTTTTGAGAAAAACTACATTTATTCTCCTAGACCTATGAAGGCC
ATAGGTGTGAGAACAGGGGTTGCTGAATTTTCCAGGCAGTCCCCCAAACA
AGCCCAAACCGGCAGGGTTGACAGAAAATGTCTTCTGCTTTTGAAAGTTT
TTGTTTTTAGTACTTCCTTTTTGACTTCCCCCCCGGCTTCTATTGCTATG
ATGAAACACCGTGACCAAAAGCCACTTTGGAAGGAACTGGTGTATTTCAG
CTTACAACCCCAGTCCACCCTCCACGGAAGTCAGGCCAGGAACTCACAGG
CAGCAGTCACAGTGCCCGGATCCATGAACGGAGCATAGGCCTTGGAGGCA
TGCCGCTTACTGCCTTGCTCCTCAACGTTTGCTTAGCTTGCCTTCCTATC
GCACCCGGAACCCCCCCCCAGCTATTACCCACCTTATATCATGACCTTGA
TTCCTACCACCTCTACTTGTTCGGTCCCTCAAATTTGGACCCTTATCAAC
CCGGTAACACACCTCCTTCCTTTAACGGTTTGGGCCCTCCAGGTTTTGCC
TCCGCCGCCCTTGTCGCTTAGCTCCCTTTTCGTCG

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTACTAACGCAATTCTCTGTAGATCAGGTTGGTCACTGACA
GAGATCCACCTGCCTCTGCCCCTTGAGAGCTGGGTTTAAAGATTTATTTA
ATTATTTTATGTATATGTATATGTATGTATGNAACCCNGNNNNNCCCCCC
CCCACCCCCCCCCCCTCACCCCCCCCCCCCCCCACTTTCCCCCCCCCCCT
TTTTCCCCATTCTCTCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCC
GCCCAGACCCCCGCCTTTAGATAATTCCCCCCCCCCCACCCCCCCAAACC
CCCCCACTCTTTTTTCTTCCCCCCCCCCCCCCCCCTATATGTTTAATTTC
CCCCATTTTTCTCTCCCCCCCTCCCCCCCCCCCCCACCACCCCACCTCTC
CCTCCCCCCCCCCCCCCCCCCTCCCCCCCTCCTCCCCCCCCCCTCACCCC
CCTCCCCCCTCTCCCCCCCCCCCCCCCACTCCCCCCCTTCCCCCTTAGTC
CTCTTCCCCCCCCTTCTCCCCCCCTCCCTCTCCCCCCTCTTTCCCTTCCC
CCCCCCCCCCCCCCCCCCCCCTTCCCCTTTCCCCCCCCCCCCCCCCCCCC
CCCTTCCTCCTCCCCCCCCCCCCCCCTCCCCTCCCTCCCCCCCCCCCTCC
CCACACACCCCTCCCCCCACCCCCCTCCCCCCCCCCCCCCCCCCTCATAC
CCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCTCCCTCCCCCCTCCG
CCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_h04.b1 MSMg01no196_h04.b1 CHROMAT_FILE:
MSMg01no196_h04.b1 PHD_FILE: MSMg01no196_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:00 2005
         (321 letters)



>mm_chr7_134238926_134239647
          Length = 722

 Score =  557 bits (288), Expect = e-163
 Identities = 309/316 (97%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaagtcaaagctaagcttgtatgttgagacagacattccttacttaagctttg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaagtcaaagctaagcttgtatgttgagacagacattccttacttaagctttg 263

                                                                       
Query: 64  taattaggggctgtgggctcagctttgtcaggactggatcagagggagactactaagatc 123
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 taattaggggctgtgagctcagctttgtcaggactggatcagagggagactactaagacc 323

                                                                       
Query: 124 aagattgagggcactctaatttggatttttttttttttt-gagaaaaactacatttattc 182
           ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 aagcttgagggcactctaatttggatttttttttttttttgagaaaaactacatttattc 383

                                                                       
Query: 183 tcctagacctatgaaggccataggtgtgagaacaggggttgctgaattttccaggcagtc 242
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 tcctagacctatgaaggccataggtgtgagaacaggggttgctgaatttttcaggcagtc 443

                                                                       
Query: 243 ccccaaacaagcccaaaccggcagggttgacagaaaatgtcttctgcttttgaaagtttt 302
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 444 ccccaaacaagcccaaaccggcagggttgacagaaaacgttttctgcttttgaaagtttt 503

                           
Query: 303 tgtttttagtacttcc 318
           ||||||||||||||||
Sbjct: 504 tgtttttagtacttcc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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