CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTTCTCCAGGCAGACCTTGCACCTGAGATCCTCCTGCCTCA
GCCTCTCAAGTACACTGTGATTCCTGCCTTGTAACAAGCAGGCTCATCTT
TTGTCTCCTGGTTAGTAGTCTTGGTAACAGCTCCTAGGCACGTCTTTTGC
TTCTTCTGTCTCAGCCTCTGTGACTTCACCGGAAGCTCTCGGGTCTTGTA
AGGTAAGAGAGATCGTGACAGCCTCACTACACCATGCACAGTGAAAATGC
ACTCCTTGCCTTGGCTTATAAGATCCTAGAAGGCAGGCTAGGGCTATATA
GCTCAGTTGGTACAGTGCTTGCCCAACACCCACCGAGCCCTGAGTTCCAT
CTTTAATACCACATAAACTGGCTCTGTGGCACACAGTAGGTGGACACATA
AACTGGCTCTGTGGCACACATTAGGTGGAACAGAAAATCAGAAGTTCAAG
ATCCTCAATGATGAGAATCTGTCTCAAACCAAACCAAACTTTAGATGATC
TGACCCTGCCTAGCAGCAGCCTCTTCAAATACTCTTCTGTCCCTGCCCAC
CTCATTTCCTCAACACTCAGGCCTTTCTTACTTGGCACCCTGTGTCCTCG
CAGTCAGCATGCTCCTTGCCTGTCTGTGTCCATGGAGCTAGCACCTTGTC
CTTTAGACCTGGGCAGGGCTATCACCTCCTGTGGCC

TCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTACTTCAGCCAATTTTGGTT
TTATTCTCCACAGAATAAATGGTGATAATGGCTTTAGATTTTTGTTTGTT
TGTTTGTTTGTTTGTTTTGAGGGAAGTTGNNNANNNNNNNNNNNNNTANN
NNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTNTTTTTT
NNNNNTTNNNNNNNTTTTTTTTTTTTCCCCCNNNCCCCNNNCCCNNNNNN
NNTNTNNNNNNATNNNNNNNNNNNNNGTNCCCCCCCCCAAAAAAAAAAAA
AACACCCCCCCCGCGGCCGCCCCCCCCCCCCCCCCACTCCCCCCCCTCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCCCCCTTATCCCC
CCACCCCCCCCCTCTCCCCCACCCCCCCCCACCCCCCCCCCCCCCCCCAC
ACCCCCCCCCCCCCCTCCCCCTCACCCCCCCCCCCCCCCCTCCCCCCCCC
CCCCCCCCCCCCCCTCCCCCCACCCCCCCCCACCTCCCCCTCCCCCCCAC
CCCTCCCCCCCCCCCTCCCCACCCCCCCCCCCCCCCCCCCCTTCCCCACC
CCCTCCTCCCCCCCCTCCCCCTCCCCACCCCCCG

Query= MSMg01no196_p23.b1 MSMg01no196_p23.b1 CHROMAT_FILE:
MSMg01no196_p23.b1 PHD_FILE: MSMg01no196_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:43 2005
         (625 letters)



>mm_chr7_123338637_123339661
          Length = 1025

 Score = 1158 bits (599), Expect = 0.0
 Identities = 615/621 (99%), Gaps = 2/621 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctgttctccaggcagaccttgcacctgagatcctcctgcctcagcctctca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactctgttctccaggcagaccttgcacctgagatcctcctgcctcagcctctca 264

                                                                       
Query: 65  agtacactgtgattcctgccttgtaacaagcaggctcatcttttgtctcctggttagtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtacactgtgattcctgccttgtaacaagcaggctcatcttttgtctcctggttagtag 324

                                                                       
Query: 125 tcttggtaacagctcctaggcacgtcttttgcttcttctgtctcagcctctgtgacttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttggtaacagctcctaggcacgtcttttgcttcttctgtctcagcctctgtgacttca 384

                                                                       
Query: 185 ccggaagctctcgggtcttgtaaggtaagagagatcgtgacagcctcactacaccatgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccggaagctctcgggtcttgtaaggtaagagagatcgtgacagcctcactacaccatgca 444

                                                                       
Query: 245 cagtgaaaatgcactccttgccttggcttataagatcctagaaggcaggctagggctata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 445 cagtgaaaatgcactccttgccttggcttataagatcctagaaggcaggctagggc--ta 502

                                                                       
Query: 305 tagctcagttggtacagtgcttgcccaacacccaccgagccctgagttccatctttaata 364
           |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 503 tagctcagttggcacagtgcttgcccaacacccactgagccctgagttccatctttaata 562

                                                                       
Query: 365 ccacataaactggctctgtggcacacagtaggtggacacataaactggctctgtggcaca 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 563 ccacataaactggctctgtggcacacagtaggtggacacataaactggctctctggcaca 622

                                                                       
Query: 425 cattaggtggaacagaaaatcagaagttcaagatcctcaatgatgagaatctgtctcaaa 484
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cagtaggtggaacagaaaatcagaagttcaagatcctcaatgatgagaatctgtctcaaa 682

                                                                       
Query: 485 ccaaaccaaactttagatgatctgaccctgcctagcagcagcctcttcaaatactcttct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccaaaccaaactttagatgatctgaccctgcctagcagcagcctcttcaaatactcttct 742

                                                                       
Query: 545 gtccctgcccacctcatttcctcaacactcaggcctttcttacttggcaccctgtgtcct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtccctgcccacctcatttcctcaacactcaggcctttcttacttggcaccctgtgtcct 802

                                
Query: 605 cgcagtcagcatgctccttgc 625
           |||||||||||||||||||||
Sbjct: 803 cgcagtcagcatgctccttgc 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)