BAC Information

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BAC

Clone NameMSMg01-197L01
Chromosome7 (Build37)
Map Location 101,552,134 - 101,552,787
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666783, EG638305, EG545982
Downstream geneEG666816, LOC100040132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197L01.T7 (MSMg01no197_l01.b1)MSMg01-197L01.TJ (MSMg01no197_l01.g1)
ACCAG385315AG385316
length759737
length of high quality
(start - end)
59 (307 - 365)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no197_l01.b1 PHD_FILE: MSMg01no197_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:40 2005CHROMAT_FILE: MSMg01no197_l01.g1 PHD_FILE: MSMg01no197_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTCCGCGGGGGCNTNAGATCCCGCCGTTCCCCCAAATTAAATAA
CAACTCTATAATTTGCGGCCGCTAAACGAATCAAATTTCGAACCGAGGCG
CNGGAANCACCATTTTGCAACACAGAGGAAGCNNGCNACACCGGACNANA
GAGAAGAAACCGGGCNCTGTGGGCCCCCCNAGGGCGANNANGGNANNCCC
NGGNNGGGGNGAGANNNGCNACGGNCCNNAGNNAANACNNGGCAGACCAG
GNCGGAGCGGCGGGCNCCGGCNNNGGNAAGGCANAANCAGNNACCGAACA
GGTATCTTCCTTACTGTATTCCTGCCTGATTCCAAGGTCTTCTGGAACCT
TGGAACACTGATGAAGGTTTTTTTTTTGTCAGAACNCAATCTTAAAAGGC
ACTTATAATATTATAATACTAAAAGAGAGCACATGGATCCATACACCAGA
CTAACGCAGGGATAGGGTATGAGTATATGGGTTAATGAGAACGCCAAACC
TCCAGGAGGTGGGTTTCCATGAAACTTTATGCCTCTTTATGCCTCGTGAG
TGCTTCTAGGCTTCTCAGCCTGTCAAGCAGATTTCACTGGAGTGCGTGGC
AATCATAAAACTCAAGCAGGTCCTCAGATAATAGATTGTATGTGTTTGGA
TTAAAAAGATATGATAGTTCTATGATTTTTTAGAAAGAGCACTTTTACAG
AGTTATTTTTGTTCGAAAAAATGAAGCTACTATAGCAAATGAAGAAAATT
GACATGGAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCGGTGATTCCCCCCACAGAAACT
TTAAAGCACATTGTTAAAATAGAGGAGACTGAAGAGAATTGAAATAACTT
TAGCAGGCATGGTTTCTTCTTCAGTATCATTACCCTTTCATTCCATTCAT
TTGCCTCTCTTCTGTTTTTCAGATGTCATTCAATGGAATGCAGACCATTT
AATCTGAAGGGGAAAATGGGGAAACATGATTATTTGTATCTTCTTTTTAT
GTACTCCTTTGCTCAATATTATCTGAGATTGATTTCTGTGTTAGTATTAG
CTGACAAAATGCCTCCAAATTCTATGAACAGTTGAGATCTTCTCTGGGAA
GGTTGGAAAAAAAGTACATGTCTTATATTTATAAACTCAGAATGTCCTTA
CTATTTGTAATAATTATATAGACACTAAATACAACATTTTGCTTGACCAC
TTCTAATGCTCATAATTTTGAGTTTCTAGGAAAGAAGCAGAACATGCCTG
TTTGATTGACACTTCTCATCTTTAAAAATGAGTTAACCATCACACCAGGA
CCATCTGCTTCCTGCAAGGAGATAATAGGTTGATTGTATAACAATTTCTT
CCAATTCACCTTAAATCTAAAGAACTGAGAATATATATTGCTAGCCTTTG
TATTTATTATTTTTAAATATGTGAAATTGTGTTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_l01.g1 MSMg01no197_l01.g1 CHROMAT_FILE:
MSMg01no197_l01.g1 PHD_FILE: MSMg01no197_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:40 2005
         (654 letters)



>mm_chr7_101551934_101552987
          Length = 1054

 Score = 1265 bits (654), Expect = 0.0
 Identities = 654/654 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcggtgattccccccacagaaactttaaagcacattgttaaaatagaggagactgaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcggtgattccccccacagaaactttaaagcacattgttaaaatagaggagactgaagag 260

                                                                       
Query: 61  aattgaaataactttagcaggcatggtttcttcttcagtatcattaccctttcattccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgaaataactttagcaggcatggtttcttcttcagtatcattaccctttcattccat 320

                                                                       
Query: 121 tcatttgcctctcttctgtttttcagatgtcattcaatggaatgcagaccatttaatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatttgcctctcttctgtttttcagatgtcattcaatggaatgcagaccatttaatctg 380

                                                                       
Query: 181 aaggggaaaatggggaaacatgattatttgtatcttctttttatgtactcctttgctcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggggaaaatggggaaacatgattatttgtatcttctttttatgtactcctttgctcaa 440

                                                                       
Query: 241 tattatctgagattgatttctgtgttagtattagctgacaaaatgcctccaaattctatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattatctgagattgatttctgtgttagtattagctgacaaaatgcctccaaattctatg 500

                                                                       
Query: 301 aacagttgagatcttctctgggaaggttggaaaaaaagtacatgtcttatatttataaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagttgagatcttctctgggaaggttggaaaaaaagtacatgtcttatatttataaac 560

                                                                       
Query: 361 tcagaatgtccttactatttgtaataattatatagacactaaatacaacattttgcttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagaatgtccttactatttgtaataattatatagacactaaatacaacattttgcttga 620

                                                                       
Query: 421 ccacttctaatgctcataattttgagtttctaggaaagaagcagaacatgcctgtttgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacttctaatgctcataattttgagtttctaggaaagaagcagaacatgcctgtttgat 680

                                                                       
Query: 481 tgacacttctcatctttaaaaatgagttaaccatcacaccaggaccatctgcttcctgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgacacttctcatctttaaaaatgagttaaccatcacaccaggaccatctgcttcctgca 740

                                                                       
Query: 541 aggagataataggttgattgtataacaatttcttccaattcaccttaaatctaaagaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggagataataggttgattgtataacaatttcttccaattcaccttaaatctaaagaact 800

                                                                 
Query: 601 gagaatatatattgctagcctttgtatttattatttttaaatatgtgaaattgt 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gagaatatatattgctagcctttgtatttattatttttaaatatgtgaaattgt 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)