BAC Information

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BAC

Clone NameMSMg01-197P14
Chromosome7 (Build37)
Map Location 59,675,478 - 59,675,889
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
Downstream geneEG620782, LOC100040692, Gm1865, LOC100040718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197P14.T7 (MSMg01no197_p14.b1)MSMg01-197P14.TJ (MSMg01no197_p14.g1)
ACCAG385490AG385491
length730811
length of high quality
(start - end)		685 (46 - 730)192 (73 - 264)
definitionCHROMAT_FILE: MSMg01no197_p14.b1 PHD_FILE: MSMg01no197_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:03 2005CHROMAT_FILE: MSMg01no197_p14.g1 PHD_FILE: MSMg01no197_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTACCCAGCTGAGTCAGAAAACTCAGCTTAAAGATCATCTATGGC
TGTGGTGCTCTGTGCTGGATTATCTTCCTGCTTTGTGTTTCTACACATTC
TGGTGTCTTGAGCTATTAAAGAAGTCACAACCAATACTCTAACTCCTACT
CTCCTCTTAGTTATTTCCTTCTTCAATGGCTTCCTAAGTCCTTGGTAGTA
GAAGTCATATAGTGGTATGAATGAGAATGTTCCCTGTAGGTTCAGGTACT
TGAACAACCTAGTTGCTCTTTGAGAAGGTATAGGTGGTTCCAATCAATTA
GATAAAAATAGTATGTTGCTGTTACAGTCTTTAAGAATAGCAAGATTTGT
ACCACTTTTGGGTTCTTGCTGCTCTCTGCTTGCCTTTGAAGATGTGAGCT
TTTAGACTCCTACTCCTGACTCCACACCTCCTGCTTCCTCTCATGCCTTT
CCCACCATGGTGGACTCTCACCCTTCTGTAGATGTAACTCAGGATAAACC
CTTCTTCCATAAGTCAATGTAGGTTGTGGTATTTTATCACACCAGTAGAA
ATTAATTAATACAGACCCTGATTCTTCTTTTCCCTTTACAGTCATGCTTA
ATAGAAGCACTAACTTTGAGTTCTCTTTACACAACAATATTGAGAGGACA
GATGAAGCATTTCTTTGCAAAACCACATAA

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGAGTGTGCAAAGGAGTGCATCTCTGG
GTCTGTATCTGTTTCTTATAGCTTTTGTGGGCTTTTTTCCTGTTTCATTT
GTTTTACTCTAATGGGTGTTTTTGTCTTACTTTCTTTTAATTATCTTCTA
GAGTCCTGCTCATTTTCTAATAACAAAAAGGTGGGTGGATCTCTGTGGGA
AGTGAGGTGGTGAATAACAGTCTATACTCCCAAACTTACTCTACCAAACT
CACAATTCACAACCCATTTTTTTTTTCAAACCCCACGCAAACCATTACCC
CGACAAATTTTTTTTTCCCCCCCCCACACTCCTATATTTACTTTAAGAAT
AATCCACCTTTCCCCCCCCCCTCCGATACACTAAATATTTTATTATTTTT
TTATTCATATCTACTACCCTTCTTTTTCTTTATATACACTTTATAACAAT
CACTCATCTTTATACAATCTTTTTACTTCAATCAATTCTTCCACCTTATT
TTACTATTAACGAGAACTCTCATATATTTCTTACGTACTAACAATTACAT
TTTAAATATAATTTTTATTTATTACTATTATATCTATTTTTCACTTTACA
CATTTATTTATGTTCTTTTATCCATTTATTCTCTATTAACTTTCACTTCA
CCTCTTATTTATTATACCTTATATGCTGCACTTTTACTCAAATTATTTTT
CACTCAAAACCTAACCTCATCTTTAAATTTTTATTTTCTTAACAACCCTA
CCTACCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_p14.b1 MSMg01no197_p14.b1 CHROMAT_FILE:
MSMg01no197_p14.b1 PHD_FILE: MSMg01no197_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:03 2005
         (685 letters)



>mm_chr7_59675478_59676562
          Length = 1085

 Score =  789 bits (408), Expect = 0.0
 Identities = 411/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctacccagctgagtcagaaaactcagcttaaagatcatctatggctgtggtgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 412 gaattcctacccagctgagtcagaaaactcagcttaaagatcatctatggctgcggtgct 353

                                                                       
Query: 65  ctgtgctggattatcttcctgctttgtgtttctacacattctggtgtcttgagctattaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctgtgctggattatcttcctgctttgtgtttctacacattctggtgtcttgagctattaa 293

                                                                       
Query: 125 agaagtcacaaccaatactctaactcctactctcctcttagttatttccttcttcaatgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agaagtcacaaccaatactctaactcctactctcctcttagttatttccttcttcaatgg 233

                                                                       
Query: 185 cttcctaagtccttggtagtagaagtcatatagtggtatgaatgagaatgttccctgtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 cttcctaagtccttggtagtagaagtcatatagtggtatgaatgagaatgttccctgtag 173

                                                                       
Query: 245 gttcaggtacttgaacaacctagttgctctttgagaaggtataggtggttccaatcaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gttcaggtacttgaacaacctagttgctctttgagaaggtataggtggttccaatcaatt 113

                                                                       
Query: 305 agataaaaatagtatgttgctgttacagtctttaagaatagcaagatttgtaccactttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 agataaaaatagtatgttgctgttacagtctttaagaatagcaagatttgtaccactttt 53

                                                               
Query: 365 gggttcttgctgctctctgcttgcctttgaagatgtgagcttttagactcct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  gggttcttgctgctctctgcttgcctttgaagatgtgagcttttagactcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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