Query= MSMg01no198_k18.b1 MSMg01no198_k18.b1 CHROMAT_FILE:
MSMg01no198_k18.b1 PHD_FILE: MSMg01no198_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:58 2005
(315 letters)
>mm_chr7_130516599_130517309
Length = 711
Score = 514 bits (266), Expect = e-150
Identities = 300/316 (94%), Gaps = 10/316 (3%)
Strand = Plus / Plus
Query: 5 gaattcagagttattcttggctatatacagaattagaaaccagcctggactatatgagac 64
||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 199 gaattcagagttactcttggctatatacagaattagaaagcagcctgaactatatgagac 258
Query: 65 cctt--tcaaaaaaaaa----tcacaaaacaaagtagaacagatcaaaattcagctacat 118
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cctttctcaaaaaaaaaaaattcacaaaacaaagtagaacagatcaaaattcagctacat 318
Query: 119 aaaaaaaaaaaaagacgagactcaaacacattctgatgtttttcaagtagaaaatgttca 178
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 319 ----aaaaaaaaagacaagactcaaacacattctgatgtttttcaagtagaaaatgtcca 374
Query: 179 gtatctggatatagaaactaacgtaaaaggaagaaaagaacaatcatttgattgttcaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtatctggatatagaaactaacgtaaaaggaagaaaagaacaatcatttgattgttcaag 434
Query: 239 taggacactccacttgcaaatgaagagaatgtgtctctgattgagcacagcccgagcagc 298
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 435 taggacactccacttgcaaatgaagagaatgtgtctctgattgagcacagcctgagcagc 494
Query: 299 aagaacttagctcatc 314
||||||||||||||||
Sbjct: 495 aagaacttagctcatc 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 711
Length adjustment: 9
Effective length of query: 306
Effective length of database: 702
Effective search space: 214812
Effective search space used: 214812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no198_k18.g1 MSMg01no198_k18.g1 CHROMAT_FILE:
MSMg01no198_k18.g1 PHD_FILE: MSMg01no198_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:58 2005
(286 letters)
>mm_chr7_130551995_130552680
Length = 686
Score = 530 bits (274), Expect = e-155
Identities = 283/286 (98%)
Strand = Plus / Minus
Query: 1 ttcaggcatgccagaggtaagatggaatggtgtctgcagtgcttctcaagcttcaggacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttcaggcatgccagaggtaagatggaatggtgtctgcagtgcttctcaagcttcaggacc 594
Query: 61 cagagccacgattgtgtagaccctgccaccaccgtaggctcctacatctctagcatactc 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 593 cagagccacgattgtgtagaccctgccaccaccgtagactcctacatctctagcatactc 534
Query: 121 ccagggactctgatgttgtcagtctggacactatactcatggaaccatggattcaaacat 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ccagggactctgatgttgacagtctggacactatactcatggaaccatggattcaaacat 474
Query: 181 aaggacactggcctttgaaggtcatcagtgtagtcgtgatgcctcagtgcgcccttacaa 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 473 aaggacactggcctttgaaggtcatcagtgtagtcttgatgcctcagtgcgcccttacaa 414
Query: 241 actctttcaattatccaatgactgggctttgtttgttttaacaggg 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 actctttcaattatccaatgactgggctttgtttgttttaacaggg 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
