BAC Information

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BAC

Clone NameMSMg01-199C22
Chromosome7 (Build37)
Map Location 59,875,056 - 59,875,372
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
Downstream geneEG620782, LOC100040692, Gm1865, LOC100040718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199C22.T7 (MSMg01no199_c22.b1)MSMg01-199C22.TJ (MSMg01no199_c22.g1)
ACCAG386219AG386220
length764749
length of high quality
(start - end)		695 (46 - 740)586 (84 - 669)
definitionCHROMAT_FILE: MSMg01no199_c22.b1 PHD_FILE: MSMg01no199_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:39 2005CHROMAT_FILE: MSMg01no199_c22.g1 PHD_FILE: MSMg01no199_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCCAAGGCAATTTCTTCTCAACACTGGCCATCAAAGACACTCAATA
AAGCTGGAACTTGGGAGGGAATGTTCAAATTTTACATACGTAATAATCAG
ATTCTCCAAAGCAGTGGTTCTCAACCTGTGAATTGTTATGCCCAATGAGG
TTCCATATCAGATATCCTGCATATCAAATATTTGCATTATGAATCATAAT
AGTAGCAGAATTACAGTTATGAAAAAGGAACAAAGTAATTTTATAGTTTG
GAAGTAGCCACAGCATGAGGAACTGTTTTAAGATTTAGAACTGTCTCAGA
TTTAGAAAGGTTGGTAATCATTGCTGTTGGGAAGCAGAACTGATAGAATG
AGTATGTTTTAACAAGGAATTTATTAGATTGTCTTTCATGTACGGTCTGT
GTAGTCTTACAGTGGATGTCCTCCCAATGGAGATGCTGAGAACCAGATAA
CTAGCTTATAATGCTGGATACCTCAGCAATACCAATCCAGTAGTGAGGCT
TTGGAGGGTTCCCGAGACCTGTCTTCAGTACATGCTGGATACATGAAGTA
GCTGTGTTCCAATATCAGCAAAGATGTAGCATTAGCCACAGTAGGAACAA
CAGCCTACAATAACCCACAGCAAAGCATGAAACTATGAGAGGAAAAATAA
TTTTCCACCTTTGGACCTCATTTTATGTGGCTACCACTGGAGTGTGTAAC
CCACATTTTGAAGT

CCCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
AGGTAAGAAGGACACATGCTCCACTATGCCCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCA
CTGATAAGTGAATATTAGCCCCAAACCTAGGATACCCATGATATTAGATA
TAATTTGCTATTCACATAAAACTCTAGAAGAATGATTACTGAAGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_c22.b1 MSMg01no199_c22.b1 CHROMAT_FILE:
MSMg01no199_c22.b1 PHD_FILE: MSMg01no199_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:39 2005
         (695 letters)



>mm_chr7_59874278_59875372
          Length = 1095

 Score =  567 bits (293), Expect = e-165
 Identities = 311/317 (98%)
 Strand = Plus / Minus

                                                                        
Query: 379  ttagattgtctttcatgtacggtctgtgtagtcttacagtggatgtcctcccaatggaga 438
            ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 1095 ttagattgtctttcatgtacggtctgtgtagtcttacagtggatgtcttccccatggaga 1036

                                                                        
Query: 439  tgctgagaaccagataactagcttataatgctggatacctcagcaataccaatccagtag 498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 tgctgagaaccagataactagcttataatgctggatacctcagcaataccaatccagtag 976

                                                                        
Query: 499  tgaggctttggagggttcccgagacctgtcttcagtacatgctggatacatgaagtagct 558
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 975  tgaggctttggagggttcccgagacctgtcttcggtacatgctggatacatgaagaagct 916

                                                                        
Query: 559  gtgttccaatatcagcaaagatgtagcattagccacagtaggaacaacagcctacaataa 618
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  gtgttctaatatcagcaaagatgtagcattagccacagtaggaacaacagcctacaataa 856

                                                                        
Query: 619  cccacagcaaagcatgaaactatgagaggaaaaataattttccacctttggacctcattt 678
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 855  cccacagcaaagcatgaaactatgagaggaaaaataattttcctcctttggacctcattt 796

                             
Query: 679  tatgtggctaccactgg 695
            |||||||||||||||||
Sbjct: 795  tatgtggctaccactgg 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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