BAC Information

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BAC

Clone NameMSMg01-199E19
Chromosome7 (Build37)
Map Location 82,696,110 - 82,696,451
singlet/doubletsinglet
Overlap geneAkap13
Upstream geneSlco3a1, EG665641, 0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171
Downstream geneKlhl25, LOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199E19.T7 (MSMg01no199_e19.b1)MSMg01-199E19.TJ (MSMg01no199_e19.g1)
ACCAG386286AG386287
length728748
length of high quality
(start - end)		343 (386 - 728)573 (80 - 652)
definitionCHROMAT_FILE: MSMg01no199_e19.b1 PHD_FILE: MSMg01no199_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:49 2005CHROMAT_FILE: MSMg01no199_e19.g1 PHD_FILE: MSMg01no199_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTCCAAAGCTTCCATTCATGTAACAAGTACTTCATAATACCCA
CTTAAGTGAATTAAGCATACTTAACACTATGTTTTAATTTTCAGTGCCCA
GCAAGACTCCTCTTCAAATGCTAAATGGAAAATTTAACTCCCCTCATTGT
TATCTGAAAGCTTAGGAAACACAAAGCTATTATAAAATGTATCCTTTAAA
TAGTCACCAAGAAGCATCTTTGTTAGTTCTAACAAAGCCAAGAAAATAAA
ATGTAAAGCTCAAACCACTGGAAACCAGTTAGAAAGTCCAACAGATGGAA
CAGAAACAGTATTTTTCTTTATAACCCCACACCATGGAGCAACAGTTGAT
TTCCTTAAACCTTCTGAAACTATTCACAAAGTACTGTTATTTAAATATAA
TTCTCAGATCTGGCTGGCCAGTGCCCCAGACAGTGAAACACTGAAGCAAG
GCCTACCAGAAATATACTGTTACAACAGATAATCCACTTAAGAGGTCAGA
ATGCTAACAAGGCTCAGGGTACAAAATGTAACCTAACTGTAAAGTGAGTC
AAGATTCTTTTAGTTCCGGTATGGAAACATGTTTCCCAGGAACAGGAGTG
GGTGTGGGAAGGGGAATCACTAACAAATTGGTCCTCTTTCCTACTGAGAA
CATTTAAGTACAGGTAACCTAGTTCTAA

AACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGAAACAAAGGCACCTG
AAGATTCAAAGCTAACATCTACAAATTGGAGACAACATGGGGCAATTTTC
TTTCTGGGTTACCTCAGAATGGATTTTTCTAGCTTCAGCCATTTAATTGC
AAATTTAATAATTTAATTTTTTAACAGCTGAATAATACTACAGTATATAA
TTGCTTCACATTTTTATTATCCGTTCATCAATTGTTCAATATCTAGGCTG
ATTCCTTTTCCAGGGTCTTATGAATAGAGCATTGATGAGCGTGGGGGAGC
AGGTGACACTGGAGTAGGATGTAGTCCTTCGGGAATATGGCCAAGGGTGG
TGGAACTGGATCTTGGGGTAGTTTCTTGAGGAACCTACACTCTGGATTTC
ACTCCCACTAGTGATAAAGAAAACATTCCCTTCCCCACATCCATGCAGAC
GTGTTGCCCTTTTGCAAAAAGATCGTGGGCATTCAGACTAGGAGACAAAA
TCTCAAAAGTAGCTTTAGTTTCCCTTTTCCTGGGGGTTGAAGCTGATGAA
CAGTTTTTAAAAGTTTCTCATCCATTGGTATTTCTTCTCTTGAGAACTCT
GTTTAATTGTGTGCTCCGCTTTTTTTTTAATTAAATTTGCTTTCTTAATG
TTTAATTTTTAAAAGTTGCTTATGTATTCTAGGTACTGTCTGTTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_e19.b1 MSMg01no199_e19.b1 CHROMAT_FILE:
MSMg01no199_e19.b1 PHD_FILE: MSMg01no199_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:49 2005
         (343 letters)



>mm_chr7_82695910_82696652
          Length = 743

 Score =  638 bits (330), Expect = 0.0
 Identities = 339/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagcaacagttgatttccttaaaccttctgaaactattcacaaagtactgttatttaaa 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggagcaacagttgatttccttataccttctgaaactattcacaaagtactgttatttaaa 483

                                                                       
Query: 61  tataattctcagatctggctggccagtgccccagacagtgaaacactgaagcaaggccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tataattctcagatctggctggccagtgccccagacagtgaaacactgaagcaaggccta 423

                                                                       
Query: 121 ccagaaatatactgttacaacagataatccacttaagaggtcagaatgctaacaaggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccagaaatatactgttacaacagataatccacttaagaggtcagaatgctaacaaggctc 363

                                                                       
Query: 181 agggtacaaaatgtaacctaactgtaaagtgagtcaagattcttttagttccggtatgga 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agggtacaaaatgtagcctaactgtaaagtgagtcaagattcttttagttccggtatgga 303

                                                                       
Query: 241 aacatgtttcccaggaacaggagtgggtgtgggaaggggaatcactaacaaattggtcct 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 302 aacatgtttcccaggaacaggagtgggagtgggaaggggaatcactaacaaattggtcct 243

                                                     
Query: 301 ctttcctactgagaacatttaagtacaggtaacctagttcta 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctttcctactgagaacatttaagtacaggtaacctagttcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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