Query= MSMg01no199_n21.b1 MSMg01no199_n21.b1 CHROMAT_FILE:
MSMg01no199_n21.b1 PHD_FILE: MSMg01no199_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:35 2005
(269 letters)
>mm_chr7_99457714_99458381
Length = 668
Score = 501 bits (259), Expect = e-146
Identities = 262/263 (99%), Gaps = 1/263 (0%)
Strand = Plus / Minus
Query: 5 gaattccaaggcattattctacatatacttggcagcaacacaaaatcttttcagtaaatg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaattccaaggcattatt-tacatatacttggcagcaacacaaaatcttttcagtaaatg 353
Query: 65 agtttttttacatttatttgtgtataaaaatagattcatttgactaagaccatatctttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agtttttttacatttatttgtgtataaaaatagattcatttgactaagaccatatctttt 293
Query: 125 gttgttcctgtttcttggctaaattattggttagaaaagaaaacagtgaaacaaactgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gttgttcctgtttcttggctaaattattggttagaaaagaaaacagtgaaacaaactgga 233
Query: 185 taaaaccaaataattaatttatctaaaggtttatatgtatgtgcacgtattcatgtgtgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 taaaaccaaataattaatttatctaaaggtttatatgtatgtgcacgtattcatgtgtgg 173
Query: 245 tgtgtatgtgtatttgtgtgtgt 267
|||||||||||||||||||||||
Sbjct: 172 tgtgtatgtgtatttgtgtgtgt 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 668
Length adjustment: 9
Effective length of query: 260
Effective length of database: 659
Effective search space: 171340
Effective search space used: 171340
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no199_n21.g1 MSMg01no199_n21.g1 CHROMAT_FILE:
MSMg01no199_n21.g1 PHD_FILE: MSMg01no199_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:35 2005
(467 letters)
>mm_chr7_99414821_99415688
Length = 868
Score = 826 bits (427), Expect = 0.0
Identities = 459/471 (97%), Gaps = 4/471 (0%)
Strand = Plus / Plus
Query: 1 tgtcagcctgatgtatttaggaaatgtatttattatttgattcattcgctcattcatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tgtcagcctgatgtatttaggaaatgtatttattatttgattcattcgctcattcatttg 257
Query: 61 ttaattgttctgctttgatttttttttttt---aagatagaatgctgtgttgcccgagct 117
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 258 ttaattgttctgctttgatttttttttttttttaagatagaatgctgtgttgcctgagct 317
Query: 118 gctcttaaactcaccacgtagctaaggatgacattgggctcctgattcttctgccttcac 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gctcttaaactcaccacgtagctaaggatgacattgggctcctgattcttctgccttcac 377
Query: 178 tttccaaatattgagaggatagctgtgtgctaccatgcctgggacattctcaagtttaat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttccaaatattgagaggatagctgtgtgctaccatgcctgggacattctcaagtttaat 437
Query: 238 attcatcagacgaaaatacctcagcttttacctctgtgtgacttatttccttattcttgt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 attcatcagacgaaaatacctcagcttttacctctgtgtgacttatttccttattcttgt 497
Query: 298 atgcacatgtccattttttta-tcaacaataaaatatatttatttacccccccagacaac 356
||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| |
Sbjct: 498 atgcacatgtccatttttttaatcaacaataaaatatatttatttatttctccagacagc 557
Query: 357 ttcccaaagaaatcccacttctgatagaaatgaaaaatgtggtgaatagcatatagggtt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttcccaaagaaatcccacttctgatagaaatgaaaaatgtggtgaatagcatatagggtt 617
Query: 417 ttatgggaggagcatgtcatgaatgacaatgaacattcaacaatgctcaag 467
||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 618 ttatgggaggagcatgtcatgaatgacaacgaacattcaacaattctcaag 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space: 392106
Effective search space used: 392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
