BAC Information

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BAC

Clone NameMSMg01-202J14
Chromosome7 (Build37)
Map Location 12,835,591 - 12,835,902
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092
Downstream geneV1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202J14.T7 (MSMg01no202_j14.b1)MSMg01-202J14.TJ (MSMg01no202_j14.g1)
ACCAG387691AG387692
length723735
length of high quality
(start - end)
317 (45 - 361)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no202_j14.b1 PHD_FILE: MSMg01no202_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:28 2005CHROMAT_FILE: MSMg01no202_j14.g1 PHD_FILE: MSMg01no202_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTTTCTTCTGAGGAATTTCATTACTAATGTACTTCATTTATAA
TAATTTTTACTAAAAGAAGACCTTTTTTCTGCAAAGAAGAAATATGTCAA
ATACAGTCCTTTAGTCTTCTAGAGTATGTACATCTCAATAACCCAAGTAC
TTATCATTGATGTTCTAAAAGCTCTATTACCTCCATGGGGATTGTAACAT
ATAATACATGGAACTTGGTGAAGAGAGTTTCAAAATCTGACTTTAGTAGC
ATTTGTAGCGAGAAATTTGGTTTCTTTAAAAAACACAGAAATGTTATAAG
AATGTTTTCATTTTCATCCCCCGCCCGGCATATTGGGCTGCTTCTGATTG
TCCACAGCAGCTGATTATGATTCATTGTATGAGCTAGGAAGGAGTGTGCT
TTTGCCAGCAACTTTTGCCATTGTGTAATGTTTGGAATTCTGGGGACTTT
TTAGAAGGTATATAAATGTTAGGGCCCAAGAGACATGGTGTATTGGTAGG
TGAATTCTTGGTTGTCGCTGCTTGATATTGGTTGAGGTTTGTTAAGAAGT
CATGCACGAAGAAGAAGCCACAGCTAGAAATTAGATATCTTGATAGCATC
AATCAAACTTGCCCCAAGGAACTCGATATCCCTAATCAGAGGAATGAAAT
CTAATCAGACTATCACTCCTGTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATAATGACACAGCATAC
TCAAACTTATGAGACACATTGAACACAGTGGTAAGAGGAAAGTTAATAGC
ACAAAGTGCCCTTGTAAGGAAATTGGAGAGATTCTATACTAGCAACTTAA
CAGCACACCTGAAAGCCCTAGATAAAAAGAAGGAAATACACCCAGGAGGA
GTAGATGACAGGAAATAATCGAACTCAGGGCTCAAATCAACCAAATAGAA
ACAAATAGAACTTTACAAAGAATCAACAAGACCCAAAGCTTGTTCTTTGA
GAAAATCAACAATATAATAATCAAAAACAAAAACAAAAAACAAAAAAGAC
CCTATCTAAACGAATTAACGGGCTGAGGGGCCATATCCAAATTAACAAAA
CCAGAAATGAAAAAGGAGACATAACAACGGAATCTGAGCAAATTAAAAAA
AAAAAAAAATCATCAGGTACTACTACATACACCTATACTCAACAAAACTG
GAAAATCTGGATGAAACTGAGGATTTTCTAGATAGATACCATGTACAAAA
GTTAAATCAACACCAAGTAAACTATCTAAACTGGCCCATATTCCCTAAAG
AAATAATAGAAGTCATTAAAATTCTTCCGAAGAAAAAAAACCAATATACA
AAACTCAAGGCCAGGTGGCTTGAGTGAAAAATGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_j14.b1 MSMg01no202_j14.b1 CHROMAT_FILE:
MSMg01no202_j14.b1 PHD_FILE: MSMg01no202_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:28 2005
         (317 letters)



>mm_chr7_12835439_12836155
          Length = 717

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%), Gaps = 1/313 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcctttcttctgaggaatttcattactaatgtacttcatttataataattttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaattcttcctttcttctgaggaatttcattactaatgtacttcatttataataattttt 405

                                                                       
Query: 65  actaaaagaagaccttttttctgcaaagaagaaatatgtcaaatacagtcctttagtctt 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 actaaaagaagaacttttttctgcaaagaagaaatatgtcaaatacagtcctttagtctt 345

                                                                       
Query: 125 ctagagtatgtacatctcaataacccaagtacttatcattgatgttctaaaagctctatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctagagtatgtacatctcaataacccaagtacttatcattgatgttctaaaagctctatt 285

                                                                       
Query: 185 acctccatggggattgtaacatataatacatggaacttggtgaagagagtttcaaaatct 244
           |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct: 284 acctccatggggattgtaacatgtaatacatggaacttggtgaagagactttcagaatct 225

                                                                       
Query: 245 gactttagtagcatttgtagcgagaaatttggtttctttaaaaaacacagaaatgttata 304
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 224 gactttagtagcatttgtagtgagaaatttggtttctttaaaaa-cacagaaatgttata 166

                        
Query: 305 agaatgttttcat 317
           |||||||||||||
Sbjct: 165 agaatgttttcat 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)