BAC Information

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BAC

Clone NameMSMg01-202P17
Chromosome7 (Build37)
Map Location 126,929,196 - 127,072,651
singlet/doubletdoublet
Overlap geneExod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3
Upstream gene9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3
Downstream geneTmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202P17.T7 (MSMg01no202_p17.b1)MSMg01-202P17.TJ (MSMg01no202_p17.g1)
ACCAG387929AG387930
length722723
length of high quality
(start - end)
673 (45 - 717)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no202_p17.b1 PHD_FILE: MSMg01no202_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:59 2005CHROMAT_FILE: MSMg01no202_p17.g1 PHD_FILE: MSMg01no202_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,071,982 - 127,072,651)(126,929,196 - 126,929,475)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATTGTCGGTGACTCTGAAGGTAGGGCCAGTGTTCAGTGCTACCC
TGAGGCTACCTGACTGACCAAGGAATACAAGGAAAGAGCTGTCAGTACTC
ATTATTTTGACATTCTGGAAAATGTCCTCACCAAGGATAGTGAGCTAATA
ATTGCCCTCCTTCCCTCCAAGGGGCAGAACTGGCTTCTGTGGCAGAGTTC
CCAGGAAGGGCCAATGCTTAACATCAAGTGTCTCCAAATAAAGCCTGCTG
GTGTAACACTTATTCCCTTTCTTGTGTCTGTACTTAAAGGAAGTGGTTGA
GGAGCTGTCCCAGGATATACTCTCCAAGCTTCCCAACGACTTTAACCTGG
AGGAGGTAATGAAGAAGTACCCCGTGGTCTATAAGGAGTCTATGAACACT
GTTCTAAGGCAGGAGCTCATCAGATTCAACAGGTGGGCCTGAAGATCTTG
CTTGGATTTTGAAAGTTGGAACCTGTGGGGAAGTACTTAAAAGGGACACT
TGATAAGATATTGCTATGCAAAGAAAGTTGTTTGCCCTACCCAAGGGGAG
AGCTATAAAATAGGGTGACCCCAGCATGTGTTGGCCACATATCAAATCAT
GCCCACTCCTCTCTCCTTCTGCTAGTATCAGAAGTAGTCATCAAAGCATT
TTTGAATGAGCCCCTAGTGTCT
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAGTGCCACCTGAAAGGAGA
GGATCTTTCCTCAGAACTGAAGGATGTGCTGTACTGGCATGAACACTGCT
GAAAGGAAATGGTTTGCATTTGGGTAACTTAAAAGCAGAGGCATCCGAAC
CTGGGTGTTTGGCTCCTTTTACATCATAGACTGTACTGTGAGGACTCTTA
TACACAATAGACTTAGATGTCTCAGAGTTTTGAGGAGTTTCCTGAAGGTC
TTCAAAGTTTTCATAACTAAGGGTTTCTGGTTCTTCTGGAACAAGTGATC
TCTCTGTTTTTTTAACCCCCCCCCCCACATTTGTGTCACTAACAGGAGGC
ATACAGTCTGTGTCTGGCTCAACCTGAAATGCTGGCAGTAAAACTACATC
TTCCCACTCAGCCAACATCGGTAAACAGTCAAAAGTATGACCCATTTCTA
CATCAGAAACATGATTAACTGACGGAATGGTTGTAGATACAAGCACTAAG
TTGGAGTTGAGTGTTGAGGACTTTGAGCTGTCATTCAGTGCAAGCTGATC
ACTTTTACTTGGCTTTTGCATAGTGAGAGGTGGATTCAAGGTGGTAGAAT
GCAGTTGGTCCACAGATGTCGACGACTTGGTAGTGAATAGAGGATAGCTA
TGTCTGATATTGTAAAGATCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_p17.b1 MSMg01no202_p17.b1 CHROMAT_FILE:
MSMg01no202_p17.b1 PHD_FILE: MSMg01no202_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:59 2005
         (673 letters)



>mm_chr7_127071779_127072851
          Length = 1073

 Score = 1241 bits (642), Expect = 0.0
 Identities = 663/670 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcattgtcggtgactctgaaggtagggccagtgttcagtgctaccctgaggct 63
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 873 ggaattctcattgtgggtgactttgaaggtagggccagtgttcagtgctaccctgaggct 814

                                                                       
Query: 64  acctgactgaccaaggaatacaaggaaagagctgtcagtactcattattttgacattctg 123
           ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 813 acctgactgactaaggaatacaaggaaagagctgtcattactcattattttgacattctg 754

                                                                       
Query: 124 gaaaatgtcctcaccaaggatagtgagctaataattgccctccttccctccaaggggcag 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gaaaatgtcctcactaaggatagtgagctaataattgccctccttccctccaaggggcag 694

                                                                       
Query: 184 aactggcttctgtggcagagttcccaggaagggccaatgcttaacatcaagtgtctccaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aactggcttctgtggcagagttcccaggaagggccaatgcttaacatcaagtgtctccaa 634

                                                                       
Query: 244 ataaagcctgctggtgtaacacttattccctttcttgtgtctgtacttaaaggaagtggt 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 633 ataaagcctgctggtgtaacacttattccctttctcgtgtctgtacttaaaggaagtggt 574

                                                                       
Query: 304 tgaggagctgtcccaggatatactctccaagcttcccaacgactttaacctggaggaggt 363
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgaggagctggcccaggatatactctccaagcttcccaacgactttaacctggaggaggt 514

                                                                       
Query: 364 aatgaagaagtaccccgtggtctataaggagtctatgaacactgttctaaggcaggagct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aatgaagaagtaccccgtggtctataaggagtctatgaacactgttctaaggcaggagct 454

                                                                       
Query: 424 catcagattcaacaggtgggcctgaagatcttgcttggattttgaaagttggaacctgtg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 catcagattcaacaggtgggcctgaagatcttgcttggattttgaaagttggaacctgtg 394

                                                                       
Query: 484 gggaagtacttaaaagggacacttgataagatattgctatgcaaagaaagttgtttgccc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gggaagtacttaaaagggacacttgataagatattgctatgcaaagaaagttgtttgccc 334

                                                                       
Query: 544 tacccaaggggagagctataaaatagggtgaccccagcatgtgttggccacatatcaaat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tacccaaggggagagctataaaatagggtgaccccagcatgtgttggccacatatcaaat 274

                                                                       
Query: 604 catgcccactcctctctccttctgctagtatcagaagtagtcatcaaagcatttttgaat 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 catgcccactcctctctccttctgctagtatcagaagtagtcatcaaagcatttttgaat 214

                     
Query: 664 gagcccctag 673
           ||||||||||
Sbjct: 213 gagcccctag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no202_p17.g1 MSMg01no202_p17.g1 CHROMAT_FILE:
MSMg01no202_p17.g1 PHD_FILE: MSMg01no202_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:59 2005
         (283 letters)



>mm_chr7_126928996_126929678
          Length = 683

 Score =  518 bits (268), Expect = e-151
 Identities = 277/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttagtgccacctgaaaggagaggatctttcctcagaactgaaggatgtgctgtactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 201 cttttagtgccacctgaaaggagaggatctttcctcagaactgaaggatatgctgcactg 260

                                                                       
Query: 61  gcatgaacactgctgaaaggaaatggtttgcatttgggtaacttaaaagcagaggcatcc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatgaacactggtgaaaggaaatggtttgcatttgggtaacttaaaagcagaggcatcc 320

                                                                       
Query: 121 gaacctgggtgtttggctccttttacatcatagactgtactgtgaggactcttatacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacctgggtgtttggctccttttacatcatagactgtactgtgaggactcttatacaca 380

                                                                       
Query: 181 atagacttagatgtctcagagttttgaggagtttcctgaaggtcttcaaagttttcataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagacttagatgtctcagagttttgaggagtttcctgaaggtcttcaaagttttcataa 440

                                                   
Query: 241 ctaagggtttctggttcttctggaacaagtgatctctctg 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaagggtttctggttcttctggaacaagtgatctctctg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)