BAC Information

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BAC

Clone NameMSMg01-203L22
Chromosome7 (Build37)
Map Location 124,136,306 - 124,136,796
singlet/doubletsinglet
Overlap genenone
Upstream geneSox6, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
Downstream geneXylt1, LOC669758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203L22.T7 (MSMg01no203_l22.b1)MSMg01-203L22.TJ (MSMg01no203_l22.g1)
ACCAG388395AG388396
length728745
length of high quality
(start - end)		633 (45 - 677)366 (77 - 442)
definitionCHROMAT_FILE: MSMg01no203_l22.b1 PHD_FILE: MSMg01no203_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:00 2005CHROMAT_FILE: MSMg01no203_l22.g1 PHD_FILE: MSMg01no203_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGAGAAAGCTACCTTCGCTTTATGATTTACCATTCACCAACAACT
GCAGAGGTTTGCAAGTCTGAGGCCTGAAAAATTGTCCCTCCAGCTCAATT
CTTTCAGTGAGGGGGAACAGGAAATTACTCCAGGGAAGAGGGCTCTTTTA
TCTCCCAGCTGTAGATGCATTTAGAATGAAGGGATTAAGGAGGTCAGAGC
ATAGTCCTCCCCTGACTAAATAGGGTTGATTTATTGCTTGGCGCCTTTAT
AATTCTTTCCTAAGTAAAGGCATACAATAGTATTTAACAGCTTGGGTTTG
GAATTCCCCAAGCATGAATTCAAAATGTGCCAACATCTCCCAGATGCGCA
TGCCTGTGGGAACCGTGCTGAACCATTTTGAACCACAAACTCTTCTTCTA
TAAAATGGTTTGATAATGAACCTCCCTGGATGCGGTGCTTTTGAGAACTG
CACGGGATAATGAATAAAGCACACTTTGTTCTTGAGGCTTCATCAAGGCT
CCTTTTGAATAGTAGGTTATTTTTATTTCTTCTCATACTCCATTGAATGG
TGGTCGTCAGACCCTGCTGTCTCCCTCCAATAAGGCAGGTTCACAGTCTA
GTCACAAAACTCAGGCGACCCAGATGTCAACAGCCTTCCTAGAAGTGACT
CAGGCTGACTGATGGTGGACCAATGAGT

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACAAGTGCTTACTGACAGAAGC
CTGTATAGCTGTCTCCAGAAAGGCTCTTCCAGTGCTTGACAAATACAGAG
GTGGATGCTCACAGCCATCCATTGGACAGAGCACAGGATCCCCAATATAG
GAGGAACAACAATATGAATTAACTAGTATTCCCAGAACTCCCAGGGACTA
AATCATCAACAAAAGAGTACACATGGTGGGACTCATGGCTCCAGCTGCAT
ATGTAGCAGAGGATGGCCTAGTCAGTCATCAATGGGAGGAGAGGTCCTTG
ATCCTGTGAAGGCTCTCTGCCCCAGTATAGGGCAATGCCAGGACCAGAAA
GCAGATGTGGGTGGGTTGGCGACCACGGGGAGAGGGAGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCNN
NNNNCCCCCCCCCCCNNCCCCCTTTNCNCCCCGNNCNCCNCCCCCCCNCC
CCCCCCCCCCCTCNCCCCCCCCTCCCCCCCCCCCCCCCCCCCCNCNCCCC
CCCCCCCCCCCTTCCGNCCNCTTTTCCTTTTCCCCCCCTTTTTCTTCCCC
TCTCTCTTTCTTCTCCTTTTTCCGCTCCTTTTTGTTTTTCTCCTTTTCCC
TCTCTCCTTTTCTTTCTTCTCCCCCTGTTTTTTCTCTCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_l22.b1 MSMg01no203_l22.b1 CHROMAT_FILE:
MSMg01no203_l22.b1 PHD_FILE: MSMg01no203_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:00 2005
         (633 letters)



>mm_chr7_124136306_124137338
          Length = 1033

 Score =  942 bits (487), Expect = 0.0
 Identities = 490/491 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagagaaagctaccttcgctttatgatttaccattcaccaacaactgcagagg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggaattccagagaaagctaccttcgctttatgatttaccattcaccaacaactgcagagg 432

                                                                       
Query: 64  tttgcaagtctgaggcctgaaaaattgtccctccagctcaattctttcagtgagggggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttgcaagtctgaggcctgaaaaattgtccctccagctcaattctttcagtgagggggaa 372

                                                                       
Query: 124 caggaaattactccagggaagagggctcttttatctcccagctgtagatgcatttagaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caggaaattactccagggaagagggctcttttatctcccagctgtagatgcatttagaat 312

                                                                       
Query: 184 gaagggattaaggaggtcagagcatagtcctcccctgactaaatagggttgatttattgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaagggattaaggaggtcagagcatagtcctcccctgactaaatagggttgatttattgc 252

                                                                       
Query: 244 ttggcgcctttataattctttcctaagtaaaggcatacaatagtatttaacagcttgggt 303
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttggtgcctttataattctttcctaagtaaaggcatacaatagtatttaacagcttgggt 192

                                                                       
Query: 304 ttggaattccccaagcatgaattcaaaatgtgccaacatctcccagatgcgcatgcctgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttggaattccccaagcatgaattcaaaatgtgccaacatctcccagatgcgcatgcctgt 132

                                                                       
Query: 364 gggaaccgtgctgaaccattttgaaccacaaactcttcttctataaaatggtttgataat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gggaaccgtgctgaaccattttgaaccacaaactcttcttctataaaatggtttgataat 72

                                                                       
Query: 424 gaacctccctggatgcggtgcttttgagaactgcacgggataatgaataaagcacacttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  gaacctccctggatgcggtgcttttgagaactgcacgggataatgaataaagcacacttt 12

                      
Query: 484 gttcttgaggc 494
           |||||||||||
Sbjct: 11  gttcttgaggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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