BAC Information

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BAC

Clone NameMSMg01-204J24
Chromosome7 (Build37)
Map Location 114,131,963 - 114,292,166
singlet/doubletdoublet
Overlap geneGA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716
Upstream geneLOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711
Downstream geneNlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204J24.T7 (MSMg01no204_j24.b1)MSMg01-204J24.TJ (MSMg01no204_j24.g1)
ACCAG388924AG388925
length722726
length of high quality
(start - end)		654 (46 - 699)592 (77 - 668)
definitionCHROMAT_FILE: MSMg01no204_j24.b1 PHD_FILE: MSMg01no204_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:13 2005CHROMAT_FILE: MSMg01no204_j24.g1 PHD_FILE: MSMg01no204_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,291,517 - 114,292,166)(114,131,963 - 114,132,554)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTACAGGTTTCTCTACAGCCAATCCTTACAGAAGCAATTTCTCA
GTTGAGTTTCCTTCCCCTCATATGACAAGAACCATGCCAAGTTGCCATTG
ATATTAACATAAAACTAGACAGCACACTGGGATTTGAGGCATGTGCCAGC
AGCTTTGGCTATGCTTATGTCTAAACTGGGTCCAAGACAGATTAAATAAC
TATCCACTCATTGAAATAGTACATCTCACCTCTCATAATCAAAAGACCTT
TGTCAATTTGCTCTGGCTTAGAGTGGTCACCATTTCCACAATGTGTTCTT
CTGTTTCACAATTCTTCCTGAAATGCCTCGGAAAAATCCTGCCCCATTTT
CAAAGATGTTACCATGGNGACCAAAACCATCCCTATAGGTCATTGCTTTC
GAAAGAATACCACTCTTGCAGCTAGTTTCCTGAAGGCACTTTTGACATCC
TTGTTCCGAAGACTATAAATTATGGGGTTTAGCATTGGAGTCACCACTGT
ATAGAACACAGACATTATCTTATCCTGTTTCTTCCTAGTTTTGGTGTTTG
GCTGCATATAGTTAAATATTGCAGACCCATAGAAGAGGACAACAACAATG
AGGTGAGATCCACAGGTTGAGAACACCTTGAGTCTCCCCTCTCCAGACTG
CATCTGGATCACAGTGGATATG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCATGAGTGTGAGGACTGCAAAC
ACAGCTGAGATCAGTTTGTTGGAATTAAAAGTAGCAATAGCTCTATGTCA
GTCTTATATTAAAATCATGGCTGTATAATAAATTAGGTCCACAGTAAGAT
GGGAGACACAGGAAGAAAAGGTATTCATCCCTTAGTGGAGAATATACACA
GAACGCCCGACGCTATGTAGACATAACACAGTGGTGATGATAGAGAAGTC
TGTGACCTCCATCCAGCCTGAAGTTGGCTGAACTAGACCTCAACCTTGCT
GCCAATAAGGAGATTATCTAGGGTGGAGCCTCCCTAGATCACTCTATTGT
TCAGCCACTGTCACTGCTACCCGCCGAGAGGCCACCTAGCTATTCCAGAG
ACTACACCCTATTCTGCACGTGGTCATCTGCAGCTGGGCTCCAAGAATGA
ATTGGTGGGAACAGGCCTCCCCTCCCCCCTTTATAAGCGCAGTCACCATT
AAACATTTGAGCCTTGATCAGAATATTGTCTTGGCTCCATTTCTCTCTTG
TTCGCCTAGTTTCCCTTTCTTTCAGTGCCAGCCTGCCACTCAGGTGCACC
CCGTCCATGTGAGCCGCTGGACAGCTCACAACAGAGGTCCAAAATTATTA
ATAGCCAGAGAAAAAGTCAATAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_j24.b1 MSMg01no204_j24.b1 CHROMAT_FILE:
MSMg01no204_j24.b1 PHD_FILE: MSMg01no204_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:13 2005
         (654 letters)



>mm_chr7_114291186_114292239
          Length = 1054

 Score = 1212 bits (627), Expect = 0.0
 Identities = 644/650 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctacaggtttctctacagccaatccttacagaagcaatttctcagttgagttt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 gaattctctacaggtttgtctacagccaatccttacagaagcaatttctcagttgagttt 922

                                                                       
Query: 65  ccttcccctcatatgacaagaaccatgccaagttgccattgatattaacataaaactaga 124
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ccttcccctcaaatgataagaaccatgccaagttgccattgatattaacataaaactaga 862

                                                                       
Query: 125 cagcacactgggatttgaggcatgtgccagcagctttggctatgcttatgtctaaactgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cagcacactgggatttgaggcatgtgccagcagctttggctatgcttatgtctaaactgg 802

                                                                       
Query: 185 gtccaagacagattaaataactatccactcattgaaatagtacatctcacctctcataat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtccaagacagattaaataactatccactcattgaaatagtacatctcacctctcataat 742

                                                                       
Query: 245 caaaagacctttgtcaatttgctctggcttagagtggtcaccatttccacaatgtgttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaaagacctttgtcaatttgctctggcttagagtggtcaccatttccacaatgtgttct 682

                                                                       
Query: 305 tctgtttcacaattcttcctgaaatgcctcggaaaaatcctgccccattttcaaagatgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgtttcacaattcttcctgaaatgcctcggaaaaatcctgccccattttcaaagatgt 622

                                                                       
Query: 365 taccatggngaccaaaaccatccctataggtcattgctttcgaaagaataccactcttgc 424
           |||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taccatggtgataaaaaccatccctataggtcattgctttcgaaagaataccactcttgc 562

                                                                       
Query: 425 agctagtttcctgaaggcacttttgacatccttgttccgaagactataaattatggggtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctagtttcctgaaggcacttttgacatccttgttccgaagactataaattatggggtt 502

                                                                       
Query: 485 tagcattggagtcaccactgtatagaacacagacattatcttatcctgtttcttcctagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcattggagtcaccactgtatagaacacagacattatcttatcctgtttcttcctagt 442

                                                                       
Query: 545 tttggtgtttggctgcatatagttaaatattgcagacccatagaagaggacaacaacaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttggtgtttggctgcatatagttaaatattgcagacccatagaagaggacaacaacaat 382

                                                             
Query: 605 gaggtgagatccacaggttgagaacaccttgagtctcccctctccagact 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggtgagatccacaggttgagaacaccttgagtctcccctctccagact 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no204_j24.g1 MSMg01no204_j24.g1 CHROMAT_FILE:
MSMg01no204_j24.g1 PHD_FILE: MSMg01no204_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:14 2005
         (592 letters)



>mm_chr7_114131763_114132754
          Length = 992

 Score = 1106 bits (572), Expect = 0.0
 Identities = 587/592 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatgagtgtgaggactgcaaacacagctgagatcagtttgttggaattaaaagtagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatgagtgtgaggactgcaaacacagctgagatcagtttgttggaattaaaagtagca 260

                                                                       
Query: 61  atagctctatgtcagtcttatattaaaatcatggctgtataataaattaggtccacagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 atagctctatgtcagtcttatattaaaatcatggctgtataataaattaggtccacagtg 320

                                                                       
Query: 121 agatgggagacacaggaagaaaaggtattcatcccttagtggagaatatacacagaacgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgggagacacaggaagaaaaggtattcatcccttagtggagaatatacacagaacgc 380

                                                                       
Query: 181 ccgacgctatgtagacataacacagtggtgatgatagagaagtctgtgacctccatccag 240
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 cagacgctatgtagacataacacagtggtgatgacagagaagtctgtgacctccatccag 440

                                                                       
Query: 241 cctgaagttggctgaactagacctcaaccttgctgccaataaggagattatctagggtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgaagttggctgaactagacctcaaccttgctgccaataaggagattatctagggtgg 500

                                                                       
Query: 301 agcctccctagatcactctattgttcagccactgtcactgctacccgccgagaggccacc 360
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 501 agcctccctagatcactctattgttcagccactgtcactgctacctgctgagaggccacc 560

                                                                       
Query: 361 tagctattccagagactacaccctattctgcacgtggtcatctgcagctgggctccaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagctattccagagactacaccctattctgcacgtggtcatctgcagctgggctccaaga 620

                                                                       
Query: 421 atgaattggtgggaacaggcctcccctcccccctttataagcgcagtcaccattaaacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgaattggtgggaacaggcctcccctcccccctttataagcgcagtcaccattaaacat 680

                                                                       
Query: 481 ttgagccttgatcagaatattgtcttggctccatttctctcttgttcgcctagtttccct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgagccttgatcagaatattgtcttggctccatttctctcttgttcgcctagtttccct 740

                                                               
Query: 541 ttctttcagtgccagcctgccactcaggtgcaccccgtccatgtgagccgct 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttctttcagtgccagcctgccactcaggtgcaccccgtccatgtgagccgct 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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