BAC Information

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BAC

Clone NameMSMg01-205G05
Chromosome7 (Build37)
Map Location 94,524,570 - 94,525,066
singlet/doubletsinglet
Overlap geneNox4
Upstream geneOlfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477
Downstream geneTyr, Grm5, Ctsc, LOC100039756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205G05.T7 (MSMg01no205_g05.b1)MSMg01-205G05.TJ (MSMg01no205_g05.g1)
ACCAG389395AG389396
length735739
length of high quality
(start - end)		368 (46 - 413)497 (77 - 573)
definitionCHROMAT_FILE: MSMg01no205_g05.b1 PHD_FILE: MSMg01no205_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:15 2005CHROMAT_FILE: MSMg01no205_g05.g1 PHD_FILE: MSMg01no205_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCAGGTTACCAACTAGAGGTAGGAACTTGGTCACAGCATCTGA
CACAGAGGGCATGAAAAACTGTTTCCTGGCTTGCTCCCCGAGGCTTGTTG
AGCATGCGTTTTAGTTTTTGTTTTCTGTCTTTTACTTGTTATTCTTTGCG
AGTTTTACATTTCCCATCATACACCCTAGTCCTGCTCATCTCCCCATCCC
TTCATATCTGCCCTCTATCTTGCAACCTCTCTCCCACTGGCACATTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCCCACACTCTCTCACACACACACACACACACACACACACATGGG
GGGAGGGAGACAGGACCCACCCCTTAGAGAGAGAGGAGAGAGAGAGAGAG
AGAGAGTGTGCTGAGTATTATCTCCTCATCTGTAATGTGTCATATTCCTC
TGTCCACACATCCTCTTTTACACATACTTGCTCCTTGCATTGAGATATTG
GCTCTGGCTCAAGCTCTCTGGCTTCCGTGAAACCATCTATTATCTGTTCC
TGATTTCCACCTTTGCTGTTTGTCTTGGCCATTGGTACATTCCCTATTTT
GTCCCAAATGCCTGTTTCCTAATTTTTCCCTTGTCCTTCTCTCTATCTTA
CTATTCTTCTTCTTCCTTTTTCTATCTCCCTCCTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATTTGCTGCTTAGGACACAGCA
ATTTGGAAGGAGATCCTAGATCAGGCGAATTCATGTACGAGAAATGTACT
GTTTATGCAGAGCTGCATTTTATAAAGCATATCCTTCCTTTTTGACAGAA
GATAATTGGAGAAAAATATCACACACTGAATTCGAGACTTTTCATTGGGC
GTCCTCGGTGGAAACTTTTATTTGATGAAATAGCAAAATGTAACAGAGGG
TAAGTAATGTTCCTCACGAAGTTAACGTATGTCTGAAGATCACATTTCAG
AATTCCTGAGTCATCCCATGAAATGTTTAAAGATTAATTGCAAATATGTT
TATCACAAATTCATTTGGACACTCAGTTTCAATCAAAAGATGAAGTAAAA
TGGTTACCACTCTAAAACCTGGAACATGGAATAATTAAAGTATGATTTAG
ACATAGTTAACTGTATGCTTGCTTTAACATTTATATTTTTCCTTATTTAT
TTATCTATGTATTTATTTGGGGGGATGAGGTGTTCTTTNNTNTNNNCNTT
CTTTCCCTCTTTCCCCCCCTCTCCCTTCTTCTCCTTTCTCTCCCTTTTTC
CTTTCCTTTTCCTTCTTTTTCCTTCCCTCCCCTCTCTTTCTNTCCTTCCC
CTTCCTCCCCTTTCCCCTCTTCTTCCCTTTTTCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_g05.g1 MSMg01no205_g05.g1 CHROMAT_FILE:
MSMg01no205_g05.g1 PHD_FILE: MSMg01no205_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:15 2005
         (497 letters)



>mm_chr7_94524370_94525266
          Length = 897

 Score =  922 bits (477), Expect = 0.0
 Identities = 492/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatttgctgcttaggacacagcaatttggaaggagatcctagatcaggcgaattcatgt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 201 tgatttgctgcttaggacacagcaatttggaaggagatcctagctcaggtgaattcatgt 260

                                                                       
Query: 61  acgagaaatgtactgtttatgcagagctgcattttataaagcatatccttcctttttgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgagaaatgtactgtttatgcagagctgcattttataaagcatatccttcctttttgac 320

                                                                       
Query: 121 agaagataattggagaaaaatatcacacactgaattcgagacttttcattgggcgtcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagataattggagaaaaatatcacacactgaattcgagacttttcattgggcgtcctc 380

                                                                       
Query: 181 ggtggaaacttttatttgatgaaatagcaaaatgtaacagagggtaagtaatgttcctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggaaacttttatttgatgaaatagcaaaatgtaacagagggtaagtaatgttcctca 440

                                                                       
Query: 241 cgaagttaacgtatgtctgaagatcacatttcagaattcctgagtcatcccatgaaatgt 300
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tgaagttaacgtatgtctgaagatcacatttcaaaattcctgagtcatcccatgaaatgt 500

                                                                       
Query: 301 ttaaagattaattgcaaatatgtttatcacaaattcatttggacactcagtttcaatcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaagattaattgcaaatatgtttatcacaaattcatttggacactcagtttcaatcaa 560

                                                                       
Query: 361 aagatgaagtaaaatggttaccactctaaaacctggaacatggaataattaaagtatgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagatgaagtaaaatggttaccactctaaaacctggaacatggaataattaaagtatgat 620

                                                                       
Query: 421 ttagacatagttaactgtatgcttgctttaacatttatatttttccttatttatttatct 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 ttagacatagttaactgtatgcttgctttaacatttatatttttccttttttatttatct 680

                            
Query: 481 atgtatttatttggggg 497
           |||||||||||||||||
Sbjct: 681 atgtatttatttggggg 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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