BAC Information

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BAC

Clone NameMSMg01-205L12
Chromosome7 (Build37)
Map Location 12,902,698 - 12,903,060
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12
Downstream geneV1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205L12.T7 (MSMg01no205_l12.b1)MSMg01-205L12.TJ (MSMg01no205_l12.g1)
ACCAG389607AG389608
length741843
length of high quality
(start - end)
368 (46 - 413)44 (77 - 120)
definitionCHROMAT_FILE: MSMg01no205_l12.b1 PHD_FILE: MSMg01no205_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:39 2005CHROMAT_FILE: MSMg01no205_l12.g1 PHD_FILE: MSMg01no205_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTTTTAGAGCAAGACTTAAGCCCAATCAGAAAGTTACTGGTAT
TAATATCACGATTATACCCATACGCATGTTACAGTAGACACTGTCATTGC
TGGGTATGACTAATTATTAATCTGCTTCACCAGTAGTGTAATTAGAACAG
TGCTACACGGTGAAAGTTAGCCAGTTCTTTATTGAATAGATAGGGAGAGA
GTGGGTAGCTTTGTCTAGTCCCTGATTTTAGTGGGATTGCTTCAAGTTTC
TCACCATTTAGTGTGATGTTGGCTACTGGTTTGCTGTATAATTAAGCAAT
GGGTCTTGAATTCCTGATCTTTCCATGACTTTTATCATGAATAGGTGTTA
GATTTTGTCAAACCCCCCCTCAACATCTAATGAGATGATCATGTGGTTTT
TGTCTTTGACTTTGTTCATATATTCAATGACGTCGATGCCTTTCTGTCAA
TTTAATACGTTTTGCTTCCCTTCAATGCTTTCTATTTCATCCTGAACTAC
TGATATTTTTTTGCCTTCTTCCATTCCGATACGTTCATTCTTTTTCCTAT
CTTTTTCAACCATATGTCGTTTCATTTCTACTTGCACTCTTCATTTTATT
GCCAATTATTTATTACCCCCTTGATTCAGTCATGCTTTTCCTGTTCTTTT
CTTACCTGTCCTTTTAACGTCCCTATTTCCGCTTACGTTTT
TCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCGTTTAGTTCTATACTCCATTT
TTTTTTTTTTGATTGGGTGGTTTGCCTTTTAGAAGGATAAATTAAAATTA
ATAACAATAATCATACATACAACTATCTCATAATTACTTTATCTCTTCTC
ACTCTTCATCCCAACAAACCAACCACACAAACAAAATACTCATCCCTTCA
ACTCCTCAAATAAATAAATCTACAACCTAATCAACCTAAACCAAATAAAA
AACAATAACCAACCCCCACACAACTACCATTTTTCCATTTTACTTCACCT
TTTTTACCCATTTCCACATTATATTTTTTTTTCTCCCCCCCCCCCAACCA
AAATTTAAAAAATAATCAAAATTAAAAACTCCCCCCCCCCCCAACAAAAA
AAAAAAAACCATTTCTCCAATTCCCTTTTCCTTTTCCTACCCTCCAACAT
TAAATCCCCCTCCATTCCTTATTTCTTAACCCTTTTCCCTATCAACCTTT
TTCTATACCCTATTCCCCCTTTCCACTCCCACTTTCCATTCCCCCCTTTT
ATCACCCATTCACTTCAATACCTTTTTCCCTCCCCTTATTCCTACCACAC
TTTTCCCTTTTCTTCCCTTCATCCCACTTTTTTATTTCTCCCCCCCCCCT
ATTTCCCCTTATACACCCCACCATTCACTTATTTTCCCCCCCCCCCCCAT
TTTTCCCCCCCTTTCCATTTTTCACCCCCTTACCCTTTATTCCAACTCCC
TTTTCCTTTTTTCACCCATCTCCCTTATCTAATATATACCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_l12.b1 MSMg01no205_l12.b1 CHROMAT_FILE:
MSMg01no205_l12.b1 PHD_FILE: MSMg01no205_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:39 2005
         (368 letters)



>mm_chr7_12902684_12903451
          Length = 768

 Score =  687 bits (355), Expect = 0.0
 Identities = 361/363 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccttttagagcaagacttaagcccaatcagaaagttactggtattaatatcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaattcaccttttagagcaagacttaagcccaatcagaaagttactggtattaatatcac 318

                                                                       
Query: 65  gattatacccatacgcatgttacagtagacactgtcattgctgggtatgactaattatta 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gattatacccataggcatgttacagtagacactgtcattgctgggtatgactaattatta 258

                                                                       
Query: 125 atctgcttcaccagtagtgtaattagaacagtgctacacggtgaaagttagccagttctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atctgcttcaccagtagtgtaattagaacagtgctacacggtgaaagttagccagttctt 198

                                                                       
Query: 185 tattgaatagatagggagagagtgggtagctttgtctagtccctgattttagtgggattg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 197 tattgaatagatagggagagagtgggtagctttgtctagtccctgattttaatgggattg 138

                                                                       
Query: 245 cttcaagtttctcaccatttagtgtgatgttggctactggtttgctgtataattaagcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cttcaagtttctcaccatttagtgtgatgttggctactggtttgctgtataattaagcaa 78

                                                                       
Query: 305 tgggtcttgaattcctgatctttccatgacttttatcatgaataggtgttagattttgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  tgggtcttgaattcctgatctttccatgacttttatcatgaataggtgttagattttgtc 18

              
Query: 365 aaa 367
           |||
Sbjct: 17  aaa 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)