BAC Information

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BAC

Clone NameMSMg01-205N10
Chromosome7 (Build37)
Map Location 76,520,000 - 76,520,281
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041800, EG384639, Arrdc4, LOC384741
Downstream geneEG665410, Nr2f2, LOC100042833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205N10.T7 (MSMg01no205_n10.b1)MSMg01-205N10.TJ (MSMg01no205_n10.g1)
ACCAG389677AG389678
length727725
length of high quality
(start - end)
---284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no205_n10.b1 PHD_FILE: MSMg01no205_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:48 2005CHROMAT_FILE: MSMg01no205_n10.g1 PHD_FILE: MSMg01no205_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
AAGCAAGTTTCTAAAAAAGGTCAGTTAATCGTGATCTTGAATGGCGTCAG
GTCCGTGTTTCTTTCCCCCAAATAAAAGTGAGATCATCAAAGTAAAGTAC
CGGCTCGCTACGTGGCATGAATTGCATAGTGGGATGCCACCTGAACCCCA
TCATAGATAGGCAGGACAATGACTACTGCTACACCATGAATATCTGCTTA
TTATGCGCGATGCGTAGATGATGTTGCCTGCTTTCCGGAACCTTCCTCCA
AGAAGAGACATATTTTTTTCTTAGTAATAACCAGACCAGTAGGAACTCTT
CTTTTATGTTCTCCCCCCCCGCCCCTCATGTTTGGAACCGACGATCACAG
TTGTAATTCCCCCCACAAAAAAAAAAAGTCCTTCGTGGAGCTCTCCCGCA
TAGGACCAGATTCATCATGAGTAAATACATTGCTGTTGCTATCCCATCCA
CCATCCTACTATCAGCAAGAGGTACCCTGCCCGTCTTCGAGTTATTACGG
TATTCCTGTGATGACTTTACTTCTTTTTCCGATGCTTTTCCTCCTTACAT
TATTCCGTTTCTACTTCCCTTACTGTGTACATCAAACCTCTGTCGTCACT
TCTCCTTTCCCCGCCCCCTTTCTTATAATCTTTCTTAAATGCCCTTTTTA
CCATCCCCTGTTCAGAAATTATTTTTN
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTATCACACAGATTGGGTTCTT
TCTCATACTCTTAGTGTTTAACCACAGACTAAAGAAACCTTATGAACAAC
AGCTATCCACCAAGTAAACTAGAAAATGAATAGAATTTGAAAAAAACCAT
AGTAAAATTAAAACCAAATGAAATAATGATAATTTGCAGCAGTTATTGCA
TAATGTGAAACTTTCAGAATGGAAAGTGTCTACATTATTGTCAATATAGT
ATAACCATGTATGACATTCCTTATGATTTCTTCAAGTTCTGGTAGCTATG
ATTGCTTTATTCTTTCTCACCACCCACCTATGCAGGGTATATAGATGTTA
ATATCATTCAAAGACCCCCAACAAGAGAGTATAGTTATAACTACTCTATC
AGTCTTTGGATAAATACATTCAAAATATGTTTTATATCTGGGTCAAGGCT
AATATGAGACATTTGTGCACATTTTTTTCTAATACAATCACTTGCTGAGC
CTTCACTTTCTCCATTTTTTACAACATATACTCTATTGTTCTCAAATTCT
ATTTTCCTTGCCACTCTCATTCTGCTCATCAGTATCTCATCTCCAGGGCC
ATTTACTCCGTTACATATAGCTGATGCCCATCTAGGACTGCCCTCTGTTT
CAGGTTTCCTCTTTGTCTTATAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_n10.g1 MSMg01no205_n10.g1 CHROMAT_FILE:
MSMg01no205_n10.g1 PHD_FILE: MSMg01no205_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:48 2005
         (284 letters)



>mm_chr7_76519799_76520481
          Length = 683

 Score =  462 bits (239), Expect = e-135
 Identities = 272/287 (94%), Gaps = 9/287 (3%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttgtatcacacagattgggttctttctcatactcttagtgtttaaccaca----gactaa 57
           ||||||||||||||||||||||||||||||||| ||||||    || | |    ||||||
Sbjct: 202 ttgtatcacacagattgggttctttctcatactgttagtg----acaaaatagtgactaa 257

                                                                       
Query: 58  agaaaccttatgaacaacagctatccaccaagtaaactagaaaatgaatagaatttgaaa 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agaaaccttatgaacaacagctatccaccaagtaaactagaaaatgaatagaatttgaaa 317

                                                                       
Query: 118 aaaaccatagtaaaattaaaaccaaatgaaataatgataatttgcagcagttattgcata 177
           |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 318 aaaa-catagtaaaattaaaaccaaatgaaataatgataattttcagcagttattgcata 376

                                                                       
Query: 178 atgtgaaactttcagaatggaaagtgtctacattattgtcaatatagtataaccatgtat 237
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 atgtgaaactttcagaatggaaagtgtctacattattgtcaataaagtataaccatgtat 436

                                                          
Query: 238 gacattccttatgatttcttcaagttctggtagctatgattgcttta 284
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 437 gacattccttgtgatttcttcaagttctggtagctatgattgcttta 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space:   185350
Effective search space used:   185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)