Query= MSMg01no205_o11.b1 MSMg01no205_o11.b1 CHROMAT_FILE:
MSMg01no205_o11.b1 PHD_FILE: MSMg01no205_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:53 2005
(561 letters)
>mm_chr7_76558285_76559245
Length = 961
Score = 992 bits (513), Expect = 0.0
Identities = 531/537 (98%)
Strand = Plus / Minus
Query: 6 aattgtaaatattcttcaatatttcaattacttgtgtttttgaagtgtgtctggttcttg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aattgtaaatattcttcaatatttcaattacttgtgtttttgaagtgtgtctggttcttg 683
Query: 66 tttctaactcaccatttataaataaactcatcagagtagtgtaagtgctgctacatcgca 125
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 682 tttctaactcacaatttataaataaactcatcagagtagtgtaagtgttgctacatcgca 623
Query: 126 tgaaataaactgtgtgatgtcagttgaagttcatcctagatttgctggtcaataaatatt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgaaataaactgtgtgatgtcagttgaagttcatcctagatttgctggtcaataaatatt 563
Query: 186 gctaccccaaatatttcctcatattatgttccctgtggatataattttgtttcctttcat 245
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 562 gctaccccaaatatttcctcatattatgttccctgtggatataattttgttttctttcat 503
Query: 246 gaatttaattccaagttgagggaaagcactgtagtgctactcactattcttgtgagaact 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaatttaattccaagttgagggaaagcactgtagtgctactcactattcttgtgagaact 443
Query: 306 cttcacagatgtctcctgacaggagctacagttttggaaacgatcaacacacatcacata 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cttcacagatgtctcctgacaggagctacagttttggaaacgatcaacacacatcacata 383
Query: 366 cttcacaccaatcagcaatggccttcgctgtgctctccagcagtgttcctgagtcatcat 425
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cttcagagtaatcagcaatggccttcgctgtgctctccagcagtgttcctgagtcatcat 323
Query: 426 gaatagatacattgctttgcctacaaaacaccagctctctattaagacacaacaggtcct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaatagatacattgctttgcctacaaaacaccagctctctattaagacacaacaggtcct 263
Query: 486 ctgggcttctatgaaagaagatgctatcactctgcttttcttagcaaaaaaaaaaaa 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgggcttctatgaaagaagatgctatcactctgcttttcttagcaaaaaaaaaaaa 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no205_o11.g1 MSMg01no205_o11.g1 CHROMAT_FILE:
MSMg01no205_o11.g1 PHD_FILE: MSMg01no205_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:53 2005
(612 letters)
>mm_chr7_76519799_76520808
Length = 1010
Score = 1027 bits (531), Expect = 0.0
Identities = 591/611 (96%), Gaps = 2/611 (0%)
Strand = Plus / Plus
Query: 2 ttgtatcacacagattgggttctttctcatactcttagtgacaaaacagagactaaagaa 61
||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||
Sbjct: 202 ttgtatcacacagattgggttctttctcatactgttagtgacaaaatagtgactaaagaa 261
Query: 62 accttatgaacaacagctatccaccaagtaaactagaaaatgaatagaatttgaaaaaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 accttatgaacaacagctatccaccaagtaaactagaaaatgaatagaatttgaaaaaaa 321
Query: 122 ccatagtaaaattaaaaccaaatgaaataatgataatttgcagcagttattgcataatgt 181
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 322 -catagtaaaattaaaaccaaatgaaataatgataattttcagcagttattgcataatgt 380
Query: 182 gaaactttcagaatggaaagtgtctacattattgtcaatatagtataaccatgtatgaca 241
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 gaaactttcagaatggaaagtgtctacattattgtcaataaagtataaccatgtatgaca 440
Query: 242 ttccttatgatttcttcaagttctggtagctatgattgctttagcctttcaaatacttat 301
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ttccttgtgatttcttcaagttctggtagctatgattgctttagcctttcaaatacttgt 500
Query: 302 ttatgcagggtatatagatgttaatatcattcaaagaatgacaacaagtgagtatagtaa 361
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ttatgcagggtatatagatgttaatatcattcaaagaatgacaagaagtgagtatagtaa 560
Query: 362 aaactactctattagtctttggataaatacattcaaaatatgttttatatctgggtcaag 421
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 aaactactctattagtctttggataaatacattcaaaatatgttttatatttgggtcaag 620
Query: 422 gctaatatgagacatttgtgcatatttttttccaataaaatcacttgctgagccatcact 481
|||||||||| | |||| |||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 621 gctaatatgaaatatttatgcatatttttt-ccaataaaatcacatgctgagccatcact 679
Query: 482 ttctccattttttacaacaaagacactaaggttcaaaaattctacattttttgtcactct 541
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 680 ttctccattttttacaacaaagacactaaggttcaaaaaatctacattatttgtcactct 739
Query: 542 tattctgttcatcagtatcccagctccaggggaagtaactttgcgatagatagctgatgg 601
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 740 tattctgctcatcagtatcccagctccaggggaagtaactttgcaatagaaagctgatgg 799
Query: 602 gtacccaggac 612
|||||||||||
Sbjct: 800 gtacccaggac 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1010
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1000
Effective search space: 602000
Effective search space used: 602000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
