BAC Information

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BAC

Clone NameMSMg01-206B24
Chromosome7 (Build37)
Map Location 14,252,728 - 14,252,968
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267
Downstream geneLOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206B24.T7 (MSMg01no206_b24.b1)MSMg01-206B24.TJ (MSMg01no206_b24.g1)
ACCAG389853AG389854
length725718
length of high quality
(start - end)
652 (72 - 723)235 (133 - 367)
definitionCHROMAT_FILE: MSMg01no206_b24.b1 PHD_FILE: MSMg01no206_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:12 2005CHROMAT_FILE: MSMg01no206_b24.g1 PHD_FILE: MSMg01no206_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:12 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATCTCTATCCAAAAAATAATAGGAAGCAACAATTACTTTTC
CTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATA
GACTATCAGAATGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAG
GAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTG
GAAAACAATTTTCCAAGAAAAAGGTCTGAAGAAACAAGCTGGAGTAGCCA
TTCTGATATCGAATAGAATCAACTTCCAACCCAAAGTTATCAAAAAAGAC
AAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACT
CTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTA
AAGAAACTTTAGTAAAGCTCAAAGCACATATTGCACCTCAAACAATAATA
GTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACA
GAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGG
ACTTAACAGGTATCTACAGAACATTTTATCCTAAAACAAAAGATATACCT
ACTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATTGGC
CACAAAACAGGCCTCAACAGATACN
CACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAGACCTCTTTTCCCATAT
CTTTTAATTGTTCTTATCTCATTACACCCCAAATTATCTTTTATTGCCTC
TGCAGAGCTACTTTGTAAGCTTTATCCCAGAGACTCAATCATTCAAGTTG
TTGAGATGTATCTGGTTTTAATCTCCGAGTGATGAGTTTCCACGTGCAAT
TGTAGTCATTGCAATTCAATATTTAGACTCTCTAGGAAATGCATACTAGA
GAGATATTCAGCCACTCTTTGGGTGACTAGACTTTGTAAAGGCAATGCCA
CAATCAAGATATGTATTTTAAATATACTCTCGCCAAACCTCAAAATTCCC
AGCACTCATTACTTCACAGTACACCCCCAATGGACACATTAGTTGGGCCA
TTAATCATTTCCACTGGTACCTTCAGAAGGCATTAATCAGAGTCAAAAAG
GGAAAATGACCCATGGACAGAGGAAGAAACCTGCCATCTTCAGGCCAAAA
AGAAAAACCTACAAAGGTTTGGACAATACTCTGATGTGAGATCTGCAGTC
TCTAGAACTATGAGGAAGTTCTTTTTCAACAAGAGTTAAGCCACCACATG
TTACGGATATCCTGCCATCTGACACACAAAGGTTTGGGGAGATTTTTACA
ACCCGGCATTGAAATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_b24.g1 MSMg01no206_b24.g1 CHROMAT_FILE:
MSMg01no206_b24.g1 PHD_FILE: MSMg01no206_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:12 2005
         (235 letters)



>mm_chr7_14252528_14253163
          Length = 636

 Score =  296 bits (153), Expect = 8e-85
 Identities = 217/243 (89%), Gaps = 11/243 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatcttttattgcctctgcagagctactttgtaagctttatcccagagactcaatcat 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatcttttattgtctctgcagagctactttgtaagctttatcccagagactcaatcat 260

                                                                       
Query: 61  tcaagttgttgagatgtatctggttttaatctccgagtgatgagttt-ccacgtgcaatt 119
           ||||||| |||||||| ||||||||||||||||| ||  |||| ||| ||||||||||||
Sbjct: 261 tcaagtttttgagatgcatctggttttaatctccaagcaatgatttttccacgtgcaatt 320

                                                                       
Query: 120 gtagtca--ttgcaattcaatatttagactctctaggaaatgcatactagagagatattc 177
           |||||||  ||  |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 321 gtagtcagttt--aattcaatatttaggctctgtaggaaatgcatactagagagatattc 378

                                                                       
Query: 178 agccactctttgggt------gactagactttgtaaaggcaatgccacaatcaagatatg 231
           ||| |||||||||||      ||| ||||||| ||||| ||||||||  |||||||||||
Sbjct: 379 agctactctttgggtttgggtgacaagactttataaagacaatgccatgatcaagatatg 438

              
Query: 232 tat 234
           |||
Sbjct: 439 tat 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 636
Length adjustment: 9
Effective length of query: 226
Effective length of database: 627
Effective search space:   141702
Effective search space used:   141702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)