Query= MSMg01no206_k08.b1 MSMg01no206_k08.b1 CHROMAT_FILE:
MSMg01no206_k08.b1 PHD_FILE: MSMg01no206_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:53 2005
(687 letters)
>mm_chr7_141533813_141534898
Length = 1086
Score = 1147 bits (593), Expect = 0.0
Identities = 658/681 (96%), Gaps = 7/681 (1%)
Strand = Plus / Plus
Query: 4 ggaattctggtatggacctaccagaaggtgctagagcttagcaggtgccccaatcattag 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggtatggaggtaccagaaggtgctagagcttagcaggtgccccaatcattag 263
Query: 64 tgacaatggtaactggcatacagtgacagactttgttgccaacaataaaggggatctggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgacaatggtaactggcatacagtgacagactttgttgccaacaataaaggggatctggg 323
Query: 124 ctagtggccatgaggaatagtttaggaaacaggaaaagaacaagagggaatttgtcaggc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctagtggccatgaggaatagtttaggaaacaggaaaagaacaagagggaatttgtcaggc 383
Query: 184 tttggtcaaaagataagaggcagccctagagtcaatggtgtgaaagggtagaggacaaaa 243
||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct: 384 tttagtcaaaagataagaggcagctctagagtcaatggtgtgaaggggtagaggac-aaa 442
Query: 244 aaat--acctccctttgcttggacgtcatcccatctgattctgagaattgccctgataat 301
|||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 443 aaatccacctccctttgcttggacatcatcccatctgattctgagaagtgccctgataat 502
Query: 302 ttttctgacagctacaatgacagagaatcccttctccaatgaaagaattcaagtaaccat 361
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 503 ttttctgacagctacaatgacaaaaaatcccttctccaatgaaagaattcaagtaaccat 562
Query: 362 ctggtcgacttctcctactgaactaataaagttattgctgacaagtgacctaagattata 421
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctggtcaacttctcctactgaactaataaagttattgctgacaagtgacctaagattata 622
Query: 422 caaagattagctttgagcatgggtggcacacgttgtctaaaggcctgggtgacagctatt 481
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 623 caaagattagccttgagcatgggtggcacactttgtctaaaggcctgggtgacagctatt 682
Query: 482 ttggttttgtgggctgcacagtttcttttccaactctcaagctctgtcactattatagaa 541
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 683 ttggttttgtgggctgcacagtttcttttccaacactcaagctctgtcactattatagaa 742
Query: 542 gtagcaagaggacattgtatatatgaatatcaatgtataaatgaacatcagtggttgtgg 601
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 743 gtagcaagaggacattgtatatatgaacatcaatgtataaatgaacatcaatggttgtgg 802
Query: 602 gactgggctgaatcattgtttgctgacacctcctcttttcaaa-tgttgagtgagatgtg 660
|||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||
Sbjct: 803 gactgggctgaatcattgtttgctgacacctc-tctt--caaaatgttgagtgagatgtg 859
Query: 661 gttccagtttctttgtgcatt 681
||||||||||| |||||||||
Sbjct: 860 gttccagtttccttgtgcatt 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1086
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1076
Effective search space: 728452
Effective search space used: 728452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_k08.g1 MSMg01no206_k08.g1 CHROMAT_FILE:
MSMg01no206_k08.g1 PHD_FILE: MSMg01no206_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:53 2005
(634 letters)
>mm_chr7_141583250_141584283
Length = 1034
Score = 750 bits (388), Expect = 0.0
Identities = 397/400 (99%)
Strand = Plus / Minus
Query: 235 ataaattatgagctttaaaattccttgaatgcctataaggatagtcagctatgtatttga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 ataaattatgagctttaaaattccttgaatgcctataaggatagtcagctatgtatttga 975
Query: 295 cattaaatgggttttagtaatttgtttctcaaaggagttgactgttttgcctcagttggt 354
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 974 cattaaatgggttttagtaatttgtttctcaaaggagttgactgttttgtctcagttggt 915
Query: 355 caaggttttctgtgtagagtttatgatattctctagttgtcttttgggcatcttttgggt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 caaggttttctgtgtagagtttatgatattctctagttgtcttttgggcatcttttgggt 855
Query: 415 cttaggtatgtttcatgtttgcagaattgtttatagcattctaattgttaattgtctttt 474
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 854 cttaggtatgtttcatgtttgcagaattgtttatagcattgtaattgttaattgtctttt 795
Query: 475 taacatccagtgggtttgtgggtatactacaccttgttactgattttgacactgtttctt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 taacatccagtgggtttgtgggtatactacaccttgttactgattttgacactgtttctt 735
Query: 535 tttcttctctttttttttagaagtttgccgagtttattgttatattcaaaataacaacct 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tttcttctctttttttttagaagtttgccgagtttattgttatattcaaaataacaacct 675
Query: 595 ttttttttttttttttaatcaaatgagcttcttgtgggcg 634
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 674 ttttttttttttttttaatcaaatgagtttcttgtgggcg 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
