BAC Information

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BAC

Clone NameMSMg01-206M14
Chromosome7 (Build37)
Map Location 88,748,462 - 88,748,901
singlet/doubletsinglet
Overlap genenone
Upstream geneCrtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1
Downstream geneHomer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206M14.T7 (MSMg01no206_m14.b1)MSMg01-206M14.TJ (MSMg01no206_m14.g1)
ACCAG390268
length735747
length of high quality
(start - end)
---406 (132 - 537)
definitionCHROMAT_FILE: MSMg01no206_m14.b1 PHD_FILE: MSMg01no206_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:04 2005CHROMAT_FILE: MSMg01no206_m14.g1 PHD_FILE: MSMg01no206_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACCTCGCCTGGCTGAGATCAGAG
ACTCCACAGCTGAAAGGGGTTTTGCACTCGTACAAGAGCAATTGTGACAG
CAGAGAACTAACTATAAAGGAAAAGACTAAAATGGATTCTTCTTAATGTG
TAAGAATTTCTCTGAAGGCCATGATACAACTTTAACCTCTATAATATTTA
TGAAAAAAACTTTGACATCAGTGAGACTGCTGTATGTGGTGGAGCAAGCC
TATAATTCCAGTTCTTAGAAGGCTGATACAGGAGGATTGCCACAAATTTA
AGGCTAGTGTGGTCTACTTAGGAGCTCCAGGCTAGCCACAGTTATATGGT
TAAGACCTTGTTTCAAAACCCCACCAATAATAAATAAATAGCAGACCAAA
GGGGGGGCTGAGGGCTGGAGAGCTGGCTCAGTGGTTAAGAGCATTAGCTA
CACTTGCAGAGGGCCTGGGTTTGACTTCCAGCATGCACATGGTAGCTCAC
AACCTTCTGTAGCTCCAGTTCCAGAGATCTGATAACCTCTCTTCTGGTCT
CTTGATTTATTAGGTACAAGTATTATTTGTGCAGTAGTTCCTGCTTTAAC
AATGATTGAATGAGACCATTATAGACCCTTATAAGAAAGCAGGCCTGTAA
GCCTAGTTGTGTCTCTACACCTTGGATCCTCAGAACTTGTTAATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_m14.g1 MSMg01no206_m14.g1 CHROMAT_FILE:
MSMg01no206_m14.g1 PHD_FILE: MSMg01no206_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:04 2005
         (406 letters)



>mm_chr7_88748255_88749060
          Length = 806

 Score =  636 bits (329), Expect = 0.0
 Identities = 394/441 (89%), Gaps = 43/441 (9%)
 Strand = Plus / Plus

                                                                       
Query: 8   caattgtgacagcagagaactaactataaaggaaaagactaaaatggattcttcttaatg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 caattgtgacagcagagaactaactataaaggaaaagactaaaatggattcttcttaatg 267

                                                                       
Query: 68  tgtaagaatttctctgaaggccatgatacaactttaacctctataatatttatgaaaaaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgtaagaatttctctgaaggccatgatacaactttaacctctataatatttatgaaaaaa 327

                                                                       
Query: 128 actttgacatcagtgagactgctgtatgtggtggagcaagcctataattccagttcttag 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 actttgacatcagtgagactgctgtatgtggtggagcaagcctataattccagttcttag 387

                                                                       
Query: 188 aaggctgatacaggaggattgccacaaatttaaggctagtgtggtctacttaggagctcc 247
           |||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 388 aaggctgagacaggaggattgccacaaatttaaggctagtgtggtctacacaggagctcc 447

                                                                       
Query: 248 aggctagccacagttatatggttaagaccttgtttcaaaac--c--ccac---------- 293
           |||||||||||||||||||||||||||||||||||||||||  |  | ||          
Sbjct: 448 aggctagccacagttatatggttaagaccttgtttcaaaacaacaacaacaacaacaaca 507

                                                                       
Query: 294 ----------caataataa------------------ataaatagcagaccaaagggggg 325
                     |||||||||                  |||||||||||||||||||||||
Sbjct: 508 acaacaacaacaataataataataataataataataaataaatagcagaccaaagggggg 567

                                                                       
Query: 326 gctgagggctggagagctggctcagtggttaagagcattagctacacttgcagagggcct 385
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 -ctgagggctggagagctggctcagtggttaagagcattagctacacttgcagagggcct 626

                                
Query: 386 gggtttgacttccagcatgca 406
           |||||||||||||||||||||
Sbjct: 627 gggtttgacttccagcatgca 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)