BAC Information

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BAC

Clone NameMSMg01-206N05
Chromosome7 (Build37)
Map Location 36,009,940 - 36,010,243
singlet/doubletsinglet
Overlap genenone
Upstream geneGpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10
Downstream geneWdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206N05.T7 (MSMg01no206_n05.b1)MSMg01-206N05.TJ (MSMg01no206_n05.g1)
ACCAG390289AG390290
length714725
length of high quality
(start - end)
317 (36 - 352)239 (128 - 366)
definitionCHROMAT_FILE: MSMg01no206_n05.b1 PHD_FILE: MSMg01no206_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:07 2005CHROMAT_FILE: MSMg01no206_n05.g1 PHD_FILE: MSMg01no206_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGT
AGTTTTCAACACCCTCCATCTATCTGTGTCAGATCAGGTCTGAAAGCCTG
GTTTCTGGCGCGATGGCATTAAAGGCGGTGTGACCTCTAAAAGGCAGGGC
CTGGAGGAAGATGGTTAGCTCTTGGATACTGCCCATATGATCATCGGTAG
AGATGGGAATCGGTATAGTCATATATCTATATCCATATCCATATCCATAT
CCATATCCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTACCCCTGGATATCT
GTGGTTTCCTGTCTCACCATGCAATTTGATCCCCACTTCTCGAATGTGCC
ACCCTGTGTTGCGAAGCTCACACCAAAGGCTGAGTCAAAGGGGCTGTCTA
ACTTGGTACTTTCAGATTCTGAAAACTGTGAGCTAAATTAACCTTTACAG
ATAACCAACTTCAGGTATTTTGTTATAGCAATGGCTAACGAAATAAAACC
GGGCTTTATTTTTTTTTCCTGTTTGATTACATTTTACTTATTAAATGCTC
CATGCTTTTGTGTGCTTATGAGGTAGGGTTGAGCTTGCCAGGGCACACTG
TGTGCAGGTTAAGGGACTACTTGTGTGAATCATTACTCTCTTACCTTGTG
GGGCCTGGTGCCAA
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGTGAGGGGCTGGGAGTGTGG
ACCAGTGGTAGAGCCCCTGTCTACAATCTCCCAGTGAGGGGCTGTGGGGT
GGTATAGTTCAGTGGTAGAATGCTTGCTTAGTCCATCCAAAGCCCTGGAT
TTCAACATCAACGCTGTAGAATAATTAACTATTTTGGGTGTAATAGCACA
TGCCTATAACACCAACACTCATTCAGACAGCTGAAGATGGAGAATATGGG
CTAGCCTGGGCTACAAGGCCAGCCTCATCACAAAACAAATAAAAGATGTA
GCTGCCCAGTTTTATTCCTCTCAGCCTCTAGAGCCACAAGCTGAAATAAA
CCTCTTGCCTGTATAACCCCCCCAGCCTCAGGAGTTTTGTTTTAGCAACA
GTAAATGGACTAAACCTGCAACTGTCTGAATTTGGATCTCATGCTTCCTT
CTACCCCCAGCATCCAAGAGAATGAGGGTTTGCCTCTGTAGTTCCAGATA
ATAGAAGGGAAAGATGACATAAAAGACCATGGCCCAGAGGTACCCCCATG
CAGAGGTAACACAGCAGGCGATTGGCCAGTGCTAGTGAGGATTGAGGTTT
CACCATTGAAGCAATTTCGTAAACTACCCAACTCCTCCTCCTCCTCTTCC
TCTTCTTCCTTCCTCTTCTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_n05.b1 MSMg01no206_n05.b1 CHROMAT_FILE:
MSMg01no206_n05.b1 PHD_FILE: MSMg01no206_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:07 2005
         (317 letters)



>mm_chr7_36009820_36010536
          Length = 717

 Score =  489 bits (253), Expect = e-143
 Identities = 295/315 (93%), Gaps = 13/315 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggtagttttcaacaccctccatctatctgtgtcaga-tcaggtctgaaagcc 63
           |||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct: 424 gaattcaaggtagttttcaacaccctccatctatctgtgtcagattc-ggtccgaaagcc 366

                                                                       
Query: 64  tggtttctggcgcgatggcattaaaggcggtgtgacctctaaaaggcagggcctggagga 123
           |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 365 tggtttctggggtgatggcattaaaggcggtgtgacctctaagaggcagggcctggagga 306

                                                                       
Query: 124 agatggttagctcttggatactgcccatatgatcatcggtagagatgggaatcggtatag 183
           || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aggtggttagctcttgggtactgcccatatgatcatcggtagagatgggaatcggtatag 246

                                                                       
Query: 184 tcatatatctatatccatatccatatccatatccatatccatatctatctatctatctat 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||          ||
Sbjct: 245 tcatatatctatatccatatccatatccatatccatatccatatccat----------at 196

                                                                       
Query: 244 ctatctatctatctatctatctatctatctatctatctatctatctatctatctatct-a 302
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 195 ctatctatctatctatctatctatctatctatctatctatctatctatctatctatctga 136

                          
Query: 303 cccctggatatctgt 317
           |||||||||||||||
Sbjct: 135 cccctggatatctgt 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)