BAC Information

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BAC

Clone NameMSMg01-207N16
Chromosome7 (Build37)
Map Location 88,241,012 - 88,241,393
singlet/doubletsinglet
Overlap geneAlpk3
Upstream geneIdh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592
Downstream geneSlc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207N16.T7 (MSMg01no207_n16.b1)MSMg01-207N16.TJ (MSMg01no207_n16.g1)
ACCAG390935AG390936
length1,3141,230
length of high quality
(start - end)
54 (68 - 121)385 (69 - 453)
definitionCHROMAT_FILE: MSMg01no207_n16.b1 PHD_FILE: MSMg01no207_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:19 2005CHROMAT_FILE: MSMg01no207_n16.g1 PHD_FILE: MSMg01no207_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACAGTGGGCGNTATAGATACTAAGGGAGAGGATCCGCGGAATTAATG
TCAAACAGGTAAGACTATGAAAGAGAGAGAGAGAGAGAGAGAGAGAGTAT
ATGTGTGTGTGTGTGTATACACCCACGTTTATTTATNTATGTTTATAAAT
TTTTTCCATTCTAAAATTATTATATATTCTCCATTTCATTCTTTTTACAA
AATATAATTTTATATTAAATATAATATATTTCCTAATAAATAATCTTACT
TATATTAATTTAAATTTTTTATTTTATCTTTTTTAATTAATATAATTTTT
TATTCAAATTATATTATATATATTATTTATTTATTATTAATATTTTATTT
TTTTATTAAATTAATTTATTTATCTTTTATTAATAAAAAAATACTTTTTT
TTTTTTTACCAAATATATTTTTATATTTTCTTTTTAATTATAAAAACCTT
TTTTTTTTTTTCCCCCCCCCCAAAAAAAATCCTTCTCTTAAAAAAAAAGG
GGGGGGGTTTTTTTTTTTTTTTTTATTTTTTTAAATATTTTTATATTTAT
ATTATTATTTTATTATTTTATATTTTAATTTTTAGTTTTTTTTAATTTAA
TTTTATTTCTTTATTTATTAGTATATTATTTATTATTTTTTATTTTTTTA
GTGATTTTAGTTTTAATTTTTTTTTTTGTTTTTTGTTATTTTATTTGTTT
TTTATTTTTATTAATTTTTTTTGTTTTTTAATTATATGATATTTTTTTTT
TGATTTATTTTATTTTAAATTTATTATTTATTTATTTTTTTTTATATTAT
ATTTTTTTAATATTTATTTATTTATTTTGTTATTTTTATTTTTTTTTTAA
TTATATTATTATTTATTTTATAAGTATTGATTTAGTATATTTTATTTTTT
TTTATTTTTTTTTTATTATATATATTTCTATTTTAATTTTTATTTTTTTT
TTTATTATTAATAATTTATTATTATTTTTTTTTTTTATAATTTAATTTTT
TTATTTTATTTAATTTTTTTTTTTTAATTGATTTTATTTTAATTATTGTT
TTTTTGTGTTATAGTTATTGTTTTTTTTTGTTTGTTATTTATATTTAATT
TATTATATATATTAGAAATTTTTTTTAATATGATTTTTTATTAATCTTTG
TTTTTATTGTTATAATTTAATTTTTTTAGTAGTTTATTATAATTTATATT
ATTGTTTCATTATTTATATTTATTTTGTTATATTAAGTTGTATATTTATA
AATATTTTTTATTAATTTAATTTATATTTATAAAAAATTATATATTTATT
ATATGTTTATGTTA
NNTTATGACTGGAGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTACGCAGATCATACTGGCCTGAAATTTATG
ATAATTCTCTAGATTCTGGCTCCCCCCGCTGGGATTACAGGCATGCACGT
CCGTACCTAGCCCAGATGTGGTTCAGTTCGATAGAGATTAAATGCAACCA
GACAACTGAACACAGAGACTTTACAGCACTCTCCTCCAACAGGGAAACCC
TTGAAGTGCTTGTCAAATGCTGGGGATAGCCAGGCATGGTGGCACACACA
TTTAATCTCAGAATTTAGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTTG
AGACCAACCGGGTCTGCATAATGGGTTCCAGGGCAGCTCAGGCTACACTT
TGAAATGTCCTGAAGCAAACAGCCAACTTGAGGGTATGTATCTCACAATC
TTTTTTTTACCCCCCCCAAATGCATATTTCTTTCCTAAACAAAAAAGAGG
CTTGAACAAGGGGCTGAGAAGCCGTTGGGCTCGCAGCAGACTATCTGTGG
CTCTAACGCCCAAGTCCACAGGGCACTGGGAGAAATTCTGGGTCTTGGTC
TTGGTGGTTGTCATGTCCTTCAAGGACTCTGAAGGGGACAGAGGGCTTGC
ATTGACTCCTGCTAAGTGACCCCCCTACCCCATCCCACCCTTTTCTCACC
CCAGTTCATTTCCCTCTATAGTCTTTTTAAATTCCTCGCTCTTCTTACAT
CTCCCTAAAGTCATATTCTTATTCTGGTTTTTTTTTTGAATATTTTGTCA
TTTTTTTCCTTTTATTTTTTGTTCTTCTTGTAATTATATCTTGTTAAGTT
TTTCTCTATCATTTGTTTACTTTTTTTCTTCATTTATATTCCTTTTTATT
TTTCTTCTCTTTTTTTTTTTTATTTTTTTTTTTTTCTTCTTTTTTTATAT
TTTTTCTCTTCTATTATCCATTTTTTCTTATTTTATATGTCTATAATTTT
TTTTTTCTTTTTTTTTTTTCCTATTCTTTTCTTTATTATTTTTTCTTTTT
TTCATTTTTTATCTCTTTTTATTTTTATTTCTTTTTTTTTTCCTTTTTTA
TTTTTTTTTCTTTAATTTATCTTTTATTTTTTTATATATTTTGCTTCTTT
TATTTATATTTTTCTCTCTCATTATTTTTTACTCTTCTTTTTGCTTCAAT
ATTTTCTCTTTCCTCTCCTCTTCCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_n16.g1 MSMg01no207_n16.g1 CHROMAT_FILE:
MSMg01no207_n16.g1 PHD_FILE: MSMg01no207_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:19 2005
         (385 letters)



>mm_chr7_88240901_88241685
          Length = 785

 Score =  671 bits (347), Expect = 0.0
 Identities = 373/387 (96%), Gaps = 10/387 (2%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctacgcagatcatactggcctgaaatttatgataattctctagattctggctcccccc-- 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||     |  
Sbjct: 493 ctacgcagatcatactggcctgaaatttatgataattctctagattctggct-----caa 439

                                                                       
Query: 60  ---gctgggattacaggcatgcacgtccgtacctagcccagatgtggttcagttcgatag 116
              |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 438 agtgctgggattacaggcatgcacgtccgtacctagcccggatgtggttcagttcgatag 379

                                                                       
Query: 117 agattaaatgcaaccagacaactgaacacagagactttacagcactctcctccaacaggg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agattaaatgcaaccagacaactgaacacagagactttacagcactctcctccaacaggg 319

                                                                       
Query: 177 aaacccttgaagtgcttgtcaaatgctggggatagccaggcatggtggcacacacattta 236
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 318 aaacccttgaagtgcttgtcaaatgctggggataaccaggcatggtggcacacacattta 259

                                                                       
Query: 237 atctcagaatttaggaggcagaggcaggtggatctctgtgagtttgagaccaaccgggtc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atctcagaatttaggaggcagaggcaggtggatctctgtgagtttgagaccaaccgggtc 199

                                                                       
Query: 297 tgcataatgggttccagggcagctcaggctacactttgaaatgtcctgaagcaaacagcc 356
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 198 tgcataatgggttccagggcagctcaggctacacagtgaaatgtcctgaagcaaacagcc 139

                                      
Query: 357 aacttgagggtatgtatctcacaatct 383
           |||||||||||||||||||||||||||
Sbjct: 138 aacttgagggtatgtatctcacaatct 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)