BAC Information

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BAC

Clone NameMSMg01-208B07
Chromosome7 (Build37)7 (Build37)
Map Location 110,454,024 - 110,454,538110,384,207 - 110,384,495
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneStim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a
Downstream geneLOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208B07.T7 (MSMg01no208_b07.b1)MSMg01-208B07.TJ (MSMg01no208_b07.g1)
ACCAG391082AG391083
length717711
length of high quality
(start - end)		523 (46 - 568)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no208_b07.b1 PHD_FILE: MSMg01no208_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:46 2005CHROMAT_FILE: MSMg01no208_b07.g1 PHD_FILE: MSMg01no208_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:46 2005
singlet/doubletsingletsinglet
BLAST hitpluralunique
Map location.(110,454,024 - 110,454,538)(110,384,207 - 110,384,495)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAATGGCATGATAGAACTCTCCCATACACTCAGCCCCTGAACAGA
CTGAGCGAACCTGGTTTCTCAGGGGACTTGCCTTATCTTCATAAAGTCTA
TTTCTGAAGAAGCCTGTAAACTCAAATCCTGGGCTGCCGGGCACTGTGGG
AAGAGGCAGCACTTTGTCCTTCTTGATCAGGGAGCCCAGGTCTTGAGCCT
GTGTTGTGGCTCCCACTAAAATGTCTTACAGCACGTGAGTTGGTCACCTA
AAGTGGATGCAGAGGACTTACTGGAGGGTATATCAGGTGGTCCTAGTTAC
AGGTGCAGCACAGGTAAAACTGTTAACTCACTTTGTTCCAGCTTTCATTA
TGGAAAAGAAGGCTGTACACAAGGCAGATAGATTGCTTTCTGACAAGAGC
CTTGGTAAGTGCCTGGTGTCCAGGGCCTCAATAAATGTTGAGTCTTAGTG
ATCTCTTGGATATACTTGGGATAGTTTTAATGGAAAACCTCCTAAATGTG
ACCCTGTAGTATGGNGATCTAAAATATGGGGGTAATAAAAAGGTTAATGG
GGAAAAAATTCCGAAAAGAGGGGGTTAAGAAAATTTAAATTTTTTGACCA
AAGTTTTTGGGGGGAAAAAAGGGGCCCAATTTTTGGAGACCCCGCCTTAT
AATAATGTTTTAAAAAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTCTGGAGGACACACATCTAT
GGATTGGATTTCCTTTTTGTTGTTGTTGTTTTATATTTGACTGCTCTTCT
GGGAAATATTACGATTATTTCTGTGATTCAGACTGAACACAGCCTCCACC
AGCCCATGTTCTACTTCCTGTCCATTCTGTCATCTATTGTCCTGGGCTTG
TCCACATCCACCATCCCCGAGATGCTTAGAACCTTTTAGCTTAATTTTAA
AAAGATATTATTTGATGGCGGTGTTATCCAGATGTTCTTCATCCATCTGT
TCATAGGTATGGTGTCAGCTGCGCTTCCGGCCATGGCTTATGATCGCTAT
GTGGCCATCTGTAATCCCCTTCACTACACACTGGTGCTGACAAACAAGGT
AGTATTCATCAATGCTTGCCTTGTCCTCCTGAGACCCTTAGTCACTGCAA
TTCCCTTTATTGTGCTCATCCAGAGATTACCCTTCTGTGGACATCAAGTT
ATTCTGCATACATACTGTGAGCACATGGGCATTACCCTTCTGCCCTGTGC
CAGCATCAAGGTGAACATCATCTACGGTTTGTGTGCCATCTCTACCCTGG
TTTTTGATATTGTAGCAATTATTCTCTCCTATATATTCAGGTCCTCCATG
CTGTCTCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_b07.b1 MSMg01no208_b07.b1 CHROMAT_FILE:
MSMg01no208_b07.b1 PHD_FILE: MSMg01no208_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:46 2005
         (523 letters)



>mm_chr7_110453820_110454742
          Length = 923

 Score =  857 bits (443), Expect = 0.0
 Identities = 497/515 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatggcatgatagaactctcccatacactcagcccctgaacagactgagcgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatggcatgatagaactctcccatacactcagcccctgaacagactgagcgaa 264

                                                                       
Query: 65  cctggtttctcaggggacttgccttatcttcataaagtctatttctgaagaagcctgtaa 124
           ||||||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||
Sbjct: 265 cctggtttctcaggggacttgccttatcttcataaagtctatacctggagaagcttgtaa 324

                                                                       
Query: 125 actcaaatcctgggctgccgggcactgtgggaagaggcagcactttgtccttcttgatca 184
           |||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 actcaaatcctgggctaccaggcaatgtgggaagaggcagcactttgtccttcttgatca 384

                                                                       
Query: 185 gggagcccaggtcttgagcctgtgttgtggctcccactaaaatgtcttacagcacgtgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggagcccaggtcttgagcctgtgttgtggctcccactaaaatgtcttacagcacgtgag 444

                                                                       
Query: 245 ttggtcacctaaagtggatgcagaggacttactggagggtatatcaggtggtcctagtta 304
           |||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 ttggtccccgaaagtggatgcagaggacttactggagggtatatcaggtgatcctagtta 504

                                                                       
Query: 305 caggtgcagcacaggtaaaactgttaactcactttgttccagctttcattatggaaaaga 364
           |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct: 505 caggtgcagcacaggtaaaagtgttatctcactttcttccagctttcattatggaaaaga 564

                                                                       
Query: 365 aggctgtacacaaggcagatagattgctttctgacaagagccttggtaagtgcctggtgt 424
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 aggctgtacacaagacagatagattgctctctgacaagagccttggtaagtgcctggtgt 624

                                                                       
Query: 425 ccagggcctcaataaatgttgagtcttagtgatctcttggatatacttgggatagtttta 484
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagagcttcaataaatgttgagtcttagtgatctcttggatatacttgggatagtttta 684

                                              
Query: 485 atggaaaacctcctaaatgtgaccctgtagtatgg 519
           |||||||||||||||||||||||||| ||||||||
Sbjct: 685 atggaaaacctcctaaatgtgaccctatagtatgg 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no208_b07.g1 MSMg01no208_b07.g1 CHROMAT_FILE:
MSMg01no208_b07.g1 PHD_FILE: MSMg01no208_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:46 2005
         (287 letters)



>mm_chr7_110384007_110384696
          Length = 690

 Score =  532 bits (275), Expect = e-155
 Identities = 285/289 (98%), Gaps = 3/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtctggaggacacacatctatggattggatttcctttttgttgttgttgt--tt-ta 57
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||
Sbjct: 201 caggtctggaggacacacatctatggattggatttcctttttgttgttgttgttgttgta 260

                                                                       
Query: 58  tatttgactgctcttctgggaaatattacgattatttctgtgattcagactgaacacagc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttgactgctcttctgggaaatattacgattatttctgtgattcagactgaacacagc 320

                                                                       
Query: 118 ctccaccagcccatgttctacttcctgtccattctgtcatctattgtcctgggcttgtcc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccaccagcccatgttctacttcctgtccattctgtcatctattgtcctgggcttgtcc 380

                                                                       
Query: 178 acatccaccatccccgagatgcttagaaccttttagcttaattttaaaaagatattattt 237
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 acatccaccatccccgagatgcttagaaccttttggcttaattttaaaaagatattattt 440

                                                            
Query: 238 gatggcggtgttatccagatgttcttcatccatctgttcataggtatgg 286
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatggcggtgttatccagatgttcttcatccatctgttcataggtatgg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 690
Length adjustment: 9
Effective length of query: 278
Effective length of database: 681
Effective search space:   189318
Effective search space used:   189318
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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