BAC Information

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BAC

Clone NameMSMg01-208H03
Chromosome7 (Build37)
Map Location 123,967,300 - 123,967,582
singlet/doubletsinglet
Overlap genenone
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993
Downstream geneLOC100043330, Xylt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208H03.T7 (MSMg01no208_h03.b1)MSMg01-208H03.TJ (MSMg01no208_h03.g1)
ACCAG391326AG391327
length700726
length of high quality
(start - end)
319 (46 - 364)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no208_h03.b1 PHD_FILE: MSMg01no208_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:16 2005CHROMAT_FILE: MSMg01no208_h03.g1 PHD_FILE: MSMg01no208_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCAGTTGTCTTATTGCTCTAGCTAAGACTTCAAGTAGTATATT
GAATAGGTATGGAGAGAGTCGGTATCCTTGTCTTGGACATACGTTACATT
TCTTTCCATTTAGGTTGATGTTGGCTGTGGACTTGCTGTATACTGCCCTT
ATTATGTTGAGATATATAACTCTCATATCCCTAGTATCTCCAGGAATTTT
TTCATGAAGATATGCTACATTCTGTCAGAGGCCTTTTCTGTGTTTAGTAA
TATGATCATATGGTTTTGACTCTGGACAAACCTTCTTGATTGTGGTGGAT
AATCTTTTTGATGTATTCCCCCCCCCTGGTTTGTAAATATTTTATTAAGA
ATTTTTGTATGTATGCCCATAAGGAAAATTAGTCTGTAATTTTCTTTCTT
TCTTTCTTGTGTCCTTGTATAATTTACCTATAAGGGTAATTTTTGGAATA
TTCTTTCTGTTTCTATTTTGCAGAATAATTTGAGAATGGACATTAATTAT
TTTTTTAAAGGTCTGGTAGCATTCTGTGCTGAATCTATCTGGCCCTGGGC
ATTTTTGGTTGGGAAAACTTTAATTACTGCTTTTATTTCACTAGGAGTTA
TGGATCTGTTTAAATTGCTACTACCTGATCTTGATTTAATTTTGGAAGGC

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAGCACTAACTCTGTTACAGCA
CTTTAGGCAGCCTGCCAGCTCAACACTATGTTAATCGCTATTTCATTTCT
AGGCATTCGGCTTAGGCGGAATCAGCTTAGGCCCAGAGATTTCCTGATAC
ATCCTGATAAGGTAGGTTTCAGGTAGCACAGTCCTTCCAGGCTGCTGTTA
AACAAAAAGGTGGGGAGAGGAGGTTGAACAGAGTTGGAGTAGCCAGCAAT
TGATGCAAGGCATGAAATTATGTTCATAAAGGTTGTAATGAGATGATATT
TTGTCCACATTTGTTTTCACTCGCCCCCCCCCGCTTAGCCTTAAAGAGTA
GAATGTTTTGAAACTTTCCCCCGTTTTTCCTTTAGTCCTTATAAAAAAGG
CATCTAAGAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
GATAGATAGATAGATAGATAGATAATAGATAGGTTGACCGATTATACATA
CATTATAGACCCTTCCAGTTAGATAGATTCGATAGTTCGATAGGCTCATT
AATAGCCAGTAATGCCTCTTTCGCTTTCCCCCCCCTCTCCCCCCCCCCCC
CCTCTTTTTTCCCCCCCCACCCCCCCCATTCCCTTTCATTTTCCTCCCCC
CCTTCCTTCTCTCCCTTTTTTTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_h03.g1 MSMg01no208_h03.g1 CHROMAT_FILE:
MSMg01no208_h03.g1 PHD_FILE: MSMg01no208_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:16 2005
         (284 letters)



>mm_chr7_123967100_123967783
          Length = 684

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagcactaactctgttacagcactttaggcagcctgccagctcaacactatgttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 catagcactaactctgttacagcactttaggcagcctgccagctcaacactatgttaatc 424

                                                                       
Query: 61  gctatttcatttctaggcattcggcttaggcggaatcagcttaggcccagagatttcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gctatttcatttctaggcattcggcttaggcggaatcagcttaggcccagagatttcctg 364

                                                                       
Query: 121 atacatcctgataaggtaggtttcaggtagcacagtccttccaggctgctgttaaacaaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atacttcctgataaggtaggtttcaggtagcacagtccttccaggctgctgttaaacaaa 304

                                                                       
Query: 181 aaggtggggagaggaggttgaacagagttggagtagccagcaattgatgcaaggcatgaa 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aatgtggggagaggaggttgaacagagttggagtagccagcaattgatgcaaggcatgaa 244

                                                      
Query: 241 attatgttcataaaggttgtaatgagatgatattttgtccaca 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 attatgttcataaaggttgtaatgagatgatattttgtccaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)