BAC Information

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BAC

Clone NameMSMg01-208L18
Chromosome7 (Build37)
Map Location 77,933,288 - 77,933,582
singlet/doubletsinglet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208L18.T7 (MSMg01no208_l18.b1)MSMg01-208L18.TJ (MSMg01no208_l18.g1)
ACCAG391519AG391520
length788722
length of high quality
(start - end)
---295 (73 - 367)
definitionCHROMAT_FILE: MSMg01no208_l18.b1 PHD_FILE: MSMg01no208_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:39 2005CHROMAT_FILE: MSMg01no208_l18.g1 PHD_FILE: MSMg01no208_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAACAGAGGCGATGGGATGTACGANNNCNNNNNGGNCTTTCGTGCAGTAG
AGTGGTACATNAAAAATTGCAAAGAAGGAAGAGATGGAAAGAGAGAGGTA
AAGGGGAAAAGTGGATTGTTGTTCTACCAAAGAGAAGGAGGGGNNNNNNA
AAATTGGATAGGGAGGAGAAAATGGGAATAAAAAAGGAGAGGAAAAAGAG
AAAATGAAAGGAAAAAAAAGGAAGAAAAGAGAGGGAAGGGCAAAAAGGAA
AGGGAGGAGAAAAATTAAAAAAAGGAGAGGAAGGGGGGGGGGGGGGAGGG
GGGGGGGAGAAGGGAAAAAGGGGGAGGAAAGGGGTGGAGGGGGGAGGGGG
GGGAGAAAGGGGGGAAGGGAGGATATTTATGTTTTTAGCCCCCCCCCCGC
GGGGGAGAAGGAAGAGGAGGGGGGGAGGAGAAGAAGGGGTGGAAAAAAAA
AAAAAAAAAGAAGAGGGGGGGGGGGGGGGGGTTTATAAAAAGAAGGAGAG
AGAGGGAAAAAGAGAGGGAAAAGAAAAAAAAAGGAAGAGAGGAGAAGAAA
GAAAGGAAGAGGGGGGAAGAGAGGAAAAGAGAAGGAGGAAGAGAGGGGGA
GGAGAGGAGGAGGGGGGGAAGAGGGGGGGAGGGAAGAGAGGGGAAAAGGA
GAGTGGGGGAGGAGAAAGAAAGGGGGGAGAGGAGGAGGAGGGGGGGGGGG
GGAAGGGAGAGGGAGGGGGGGGAGAGGGGGGAAGAGGGGGGAAGAAAGGG
GAAAAGAGAGGGGAGACGGTGATGAAGAGGAGAGAGTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACATTTCAGATGGCAGTTAGATTGGTG
GAGGTGTGGCCTCTGGAGGGTCCACAAATAAAATAGAACATGAAGGATTC
CAGGCGGGAACACTGGGTAGGTAAAAATAGAAAACTTTTTCTTTTTTATC
CCCCTTCCCTTTTTCCTTTAAGTTAATGGCAAATCAGAAGGAAAAAGAAT
ACCTTGGCTTGTAGAGTGCAGTCTACCTAAAACCCTCTATCAAAGGAGTA
AATAAAGCCCACCCTACCACCACTAACAAGAGAAGTCTTCAGTAGAGTGG
ACCAAGGTTTTTAGCATATTCCTACTCTCTAGTCTTAATGAAATCTGGAA
AAAGAAAGAAAGACCCCCACAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGTAAA
TCCACATTCATTTTCTTATTTTCCCTCATAACTAAACTCTTCCACTTAAT
CCAAATGACTTGAAAAGCTCCAAACGCAAGAGAGGCCAGAACAGAGTGAT
TTGTGGTCCACCCCCCACCGACCTCCCCTTTGAAAGTCCTCCCCGCCCCC
GGTAAACCTCACTTCGTGCTTTCTCCACTGCAGNCCCGGCAAAGCACTAG
GCCTGGAGTGAATGGAGCGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_l18.g1 MSMg01no208_l18.g1 CHROMAT_FILE:
MSMg01no208_l18.g1 PHD_FILE: MSMg01no208_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:39 2005
         (295 letters)



>mm_chr7_77933088_77933782
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatttcagatggcagttagattggtggaggtgtggcctctggagggtccacaaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatttcagatggcagttagattggtggaggtgtggcctctggagggtccacaaataaa 260

                                                                       
Query: 61  atagaacatgaaggattccaggcgggaacactgggtaggtaaaaatagaaaactttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagaacatgaaggattccaggcgggaacactgggtaggtaaaaatagaaaactttttct 320

                                                                       
Query: 121 tttttatcccccttccctttttcctttaagttaatggcaaatcagaaggaaaaagaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttatcccccttccctttttcctttaagttaatggcaaatcagaaggaaaaagaatac 380

                                                                       
Query: 181 cttggcttgtagagtgcagtctacctaaaaccctctatcaaaggagtaaataaagcccac 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 381 cttggcttgtagagtgcagtctacctaaaaccctctattaaaggagtaaataaagcccat 440

                                                                  
Query: 241 cctaccaccactaacaagagaagtcttcagtagagtggaccaaggtttttagcat 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaccaccactaacaagagaagtcttcagtagagtggaccaaggtttttagcat 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)