BAC Information

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BAC

Clone NameMSMg01-208O02
Chromosome7 (Build37)
Map Location 63,852,724 - 63,852,868
singlet/doubletsinglet
Overlap genenone
Upstream geneSiglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
Downstream geneLOC100040839, Gabrg3, Gabra5, Gabrb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208O02.T7 (MSMg01no208_o02.b1)MSMg01-208O02.TJ (MSMg01no208_o02.g1)
ACCAG391616AG391617
length697784
length of high quality
(start - end)
307 (37 - 343)145 (148 - 292)
definitionCHROMAT_FILE: MSMg01no208_o02.b1 PHD_FILE: MSMg01no208_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:50 2005CHROMAT_FILE: MSMg01no208_o02.g1 PHD_FILE: MSMg01no208_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAC
CTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCC
TTAATCATCACAAAATCACAATCACAAAAGAACTCACACAATATGTACTC
ACTGATAAGTGGATATTAGCCCCAAACTTAGGATACCCAAGATATAAGAT
ACAATTTGCCAAATGCAGGAAACTCTAGAAGAATGAAGACCAAAGTGTGG
ACACTGTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGGGTT
ACAGAGACTAAGTGTGGAGCTGTGATGAAAGGATGGACCATCTAGTGATT
CNTTATCGCCGNGCANCCCCCATAATCAGTATCCAAATGCTGACACCATT
GCCCACCCCACCAAGAAAAAGCTGAAAGGACCCCGATATAGCTCTCTCTT
GTGAGACTATGCCGGGGCCTAGCAAAACACAGAAGTGGATGATCACAGTC
AGATATTGGATGGGCCACACAGTCCCCACTGTATGAGCTAGAGAAATTAC
CCATGGAGCTAATGGGAACTGTAACCCTATTAGTGGAACAACATTTATGA
ACTATCCAGTACCCCGGTAGCCTTGCCTCTAGCTGCTTATGCACCATAAG
ATGACCCTTTCCGGCCTACACTTGTCAGTTTGGCCCTTTGCGCTCGG
AAGAACGAAATTCATTATAACACCTATATTCCTTTNNNATNTTTTTNNNN
NCCCACAATCCTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAGTCAGCCAACTGCAC
CACCTTGTCTTAAATACTCCATGCCTAACTTGAAAAAGGTCACACAATGA
TTCACAGCCAATCAGTCATTCTGATTCCTAAGGGCACGGTCTTACTCAGG
GCTATTTCAAAGTAAACTTTCTGCTATCATGAGTCTTTGTGAACTTTATG
TGACCCTGCAACCATTTCCAGCCAGGCCTGTGAATAAGTCCTTCCTCTGC
TGAACTTGCTGGGGGAAATTGTTGTTACTGGACACAGAAAATAAAGTTGC
GATTGGGGCATTTTTTTTTTCTCCCTCCCCCTCCCCCCATATGTTGGGAT
TATTCCGAAAATAATTTCTCCCCCCCCTTTTAAAAAAAAAATATGTCCCT
CGGTCACAATCTTTCAGGGTTCCAGAGGCCTGATGTATTTCCACTTTCCC
GTTTCTGTCATCCACGATAAATTTATTTTGTTTTGATTAATTATTTCCCC
CTCTTGTTTTTGTTCCTTGTAATTTATCCCATGCTAACTGCAACTTTCCA
AAATTTTGGCACTTTCTTATTGACCCCTGAAACTTAACCTTCCCCCATTA
ACCCCTATAAAAGCTCTTCATTGTTATAATTTATAATTTTGACCTATTTT
TCCCACACTCTCTACATTCATTTATAGCACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_o02.g1 MSMg01no208_o02.g1 CHROMAT_FILE:
MSMg01no208_o02.g1 PHD_FILE: MSMg01no208_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:50 2005
         (145 letters)



>mm_chr7_63852524_63853068
          Length = 545

 Score =  265 bits (137), Expect = 8e-76
 Identities = 143/145 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccaccttgtcttaaatactccatgcctaacttgaaaaaggtcacacaatgattcacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 caccaccttgtcttaaatactccatgcctaacttgaaaaaggtcacacaatgattcacag 286

                                                                       
Query: 61  ccaatcagtcattctgattcctaagggcacggtcttactcagggctatttcaaagtaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 285 ccaatcagtcattctgattcctaagggcacggtcttactcagggctatttcaaagtagac 226

                                    
Query: 121 tttctgctatcatgagtctttgtga 145
           |||||||||||||||||||| ||||
Sbjct: 225 tttctgctatcatgagtcttcgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)