BAC Information

Click to search

BAC

Clone NameMSMg01-209E20
Chromosome7 (Build37)
Map Location 85,038,542 - 85,038,778
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneA330068G13Rik, Ntrk3, Mrpl46, Mrps11, Det1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209E20.T7 (MSMg01no209_e20.b1)MSMg01-209E20.TJ (MSMg01no209_e20.g1)
ACCAG391877AG391878
length690651
length of high quality
(start - end)
373 (36 - 408)236 (57 - 292)
definitionCHROMAT_FILE: MSMg01no209_e20.b1 PHD_FILE: MSMg01no209_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:23 2005CHROMAT_FILE: MSMg01no209_e20.g1 PHD_FILE: MSMg01no209_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACCA
GAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAA
ATAAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGC
TGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATA
TAAAATATCTTGGCGTGACTCTAAGGAGGTGAAAGATCTGTATAATAAAA
ACTTCAAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAA
GATCTCCCATGCTCATGGATTGGCAGGATAAACATTGTAAAAATGTTTTT
TTTGCCCCCCCCCCCCCACAGATTCAATGCAATCCCCATCAAAATTCCAA
CTCAATTCTTCAAAGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAAT
AACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTC
TGGTGGAATCACCATTCCTGACCTAAAGCTTTACTACAGAGCAATTGTGA
TAAAAACTGCATGGTACTGGTATAGAAACAGACAAGTAGACCAATGGAAT
AGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTT
CGACAAGGGAGCTAAAACCATCCAGCGGAAGAAAGAAGCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCATAAGGTGACAGCACTATAGATACTTTGTAGGAGGCCTCATGT
GGTAAAGAAGAATAAACTCCAAAGTCAGAGGGACATGTCAACCATGCAGT
TAGACTCTGTCTTATACAAAGTTCAAAAATCCTCATAGATAAAAAGTCTT
GAGTGGTAAGATTTAAGGTGCATTTTCCCCTCATCCAGTTCAGAGAGTTT
GGGTAATGGACACACTGCCATAGGTATTCATAAAAATAGAAATTTTTTAT
GAACTGGGAAGAAGGTGGCTAGAAACTGGTTTANTTCNTTTCCCTNAGCA
TACACTTTAGGAAATCCAGTTGNCAATAGAGCATGCTAACAAAAAAAAAA
AAAGAAATCCTCTCAGAAGAGGACAACTGAGAAGGCTGACAGGAATAGGA
AGGTGGATCAGAGCAGGGAAGGGTCAAGAAACATGAGACACTTCCAGAGT
GAAAAAGCCGCCTCTCTGTGACTCTAGACATTGTAACTATCATCACCGTA
GACTCTCAGCTGACAGAAATGGCTGGTTTCTTCTCTGCTATTCCTTTTTG
TAAGGAGAGAAATTTGAGACCAAAAGGTGGTTATATCAGATCAATTACCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_e20.g1 MSMg01no209_e20.g1 CHROMAT_FILE:
MSMg01no209_e20.g1 PHD_FILE: MSMg01no209_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:23 2005
         (236 letters)



>mm_chr7_85038342_85038979
          Length = 638

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%), Gaps = 2/237 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaggtgacagcactatagatactttgtaggaggcctcatgtggtaaagaagaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaggtgacagcactatagatactttgtaggaggcctcatgtggtaaagaagaataaa 260

                                                                       
Query: 61  ctccaaagtcagagggacatgtcaaccatgcagttagactctgtcttatacaaagttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccaaagtcagagggacatgtcaaccatgcagttagactctgtcttatacaaagttcaa 320

                                                                       
Query: 121 aaatcctcatagataaaaagtcttgagtggtaagatttaaggtgcattttcccctca-tc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aaatcctcatagataaaaagtcttgagtggtaagatttaaggtgcattttcccctcagtc 380

                                                                    
Query: 180 cagttcagagagtttgggtaatggacacactgc-cataggtattcataaaaatagaa 235
           |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cagtccagagagtttgggtaatggacacactgcacataggtattcataaaaatagaa 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 638
Length adjustment: 9
Effective length of query: 227
Effective length of database: 629
Effective search space:   142783
Effective search space used:   142783
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)