BAC Information

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BAC

Clone NameMSMg01-209M06
Chromosome7 (Build37)
Map Location 115,775,489 - 115,775,811
singlet/doubletsinglet
Overlap genenone
Upstream genePpfibp2, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508
Downstream geneOlfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209M06.T7 (MSMg01no209_m06.b1)MSMg01-209M06.TJ (MSMg01no209_m06.g1)
ACCAG392165AG392166
length735822
length of high quality
(start - end)
327 (46 - 372)243 (76 - 318)
definitionCHROMAT_FILE: MSMg01no209_m06.b1 PHD_FILE: MSMg01no209_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:01 2005CHROMAT_FILE: MSMg01no209_m06.g1 PHD_FILE: MSMg01no209_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTAATCATTAGATTAATTAGCACCCAAATCTTTGCATCTTTGTA
GCAGTCAAATAATTGAGAGGTTGGTTGAACTCTCTTAAATTCTATTTTTC
TAGGATTTTTCAATAATATTTCAATAGTGAATTACATGAATTAAATTTTT
GCTTTAAATAGCTAGGAGCTTTAACTGAAAGTTGGCCTTTACTGAAATTG
CATTCTTCATAAAGCATGAAAGGTACATATTAACAACTAAACACTATATA
CATAAATACTGCACAAATATCATGATGTGGTCAGGGAAATACCTAGCCAT
ATCAACAGAGGAAAAGATGCCATTCTGTGGCTGAGATGTTTGTCTAAGGA
TCAGAAATTTGCTGATTTACTTTTATGAGTGCAAATTTTTCACCAGAGTT
TAGCAATAATAAAAAAAGAAAGGATAACAATGTAGATATTTTTCTTGCAC
ATTTTAAGTGTTTATAAAAAAGGGTGAATTCCATATGTGACCTTAAAACA
TTTATTCTCCCATCACTCAACACACAATAATATAAGATGACACCTCCATA
ATGTTTCCATAAGATCAGGATGTGGGTCATTCTGTAGAGCATTTTCCTAA
TTAGTGATTGATGAGGTGGNTCCAGCCCATTATGGGTGGTACTACCTCTA
GGCTGGTGATACAGGATTCACTAAGAAAACAAAAT
CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGTTTAATATTCCTGGATTCCTT
TTGGCTTGCCAGTTTTTTCTCTATGCTTGATAAGGTAACTTGAGTCTTGA
ATTGTTCATTTATTCAATTTACCTTGGNATACCACTGGATTTTGACCATA
TTAAATATAANTTCATAACTACAGCTCTGTANTTCCTATCTGTGCATTGA
TTGACAACTTACATTTATAGTCCCCTGAAAACATGTGTGATATCTACCAA
TATCATGTCTCTGAGGAANAATCCATGCTCCTCAATCAACGTGTNNNNGN
GTNNNNNTTTTTTTTTTCCCCCCCCCCCCCCCGGGGGGGGCCCCCCCCCG
AAAATAAGGNTAAGNNNNNNNAAAAATAGAACCNNNNNCTTTCTTTCTTT
NNNNTTTGGNACCTACATNNNNNNNNNNNAACTTTTATTTTTTAATAAAT
AAANNNNAAAANNTTTTTTCTCCTCCCCCCCTATAAAATAAGGTTTTTTT
TTTCGTTNNNNNNNNNNNNNNNNNNNNNNNTCCTTGGTTTTNNNGGGGNT
NNNAAANCCCCCCCACCCCCACCCCCCTACAAACCTACTGGGGTCACATA
CTCTAACAAAGGTATTGGCTCCTGGTTTTTNNNNNNNNNNNNNNNNGCGG
GGTCTTCTGGTGTTGGGGGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCTTCTTTCNCCTTTGT
GGGGGTGTAAGTAACAATGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_m06.b1 MSMg01no209_m06.b1 CHROMAT_FILE:
MSMg01no209_m06.b1 PHD_FILE: MSMg01no209_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:01 2005
         (327 letters)



>mm_chr7_115775285_115776011
          Length = 727

 Score =  625 bits (323), Expect = 0.0
 Identities = 323/323 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttaatcattagattaattagcacccaaatctttgcatctttgtagcagtcaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaatcattagattaattagcacccaaatctttgcatctttgtagcagtcaaa 264

                                                                       
Query: 65  taattgagaggttggttgaactctcttaaattctatttttctaggatttttcaataatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taattgagaggttggttgaactctcttaaattctatttttctaggatttttcaataatat 324

                                                                       
Query: 125 ttcaatagtgaattacatgaattaaatttttgctttaaatagctaggagctttaactgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcaatagtgaattacatgaattaaatttttgctttaaatagctaggagctttaactgaa 384

                                                                       
Query: 185 agttggcctttactgaaattgcattcttcataaagcatgaaaggtacatattaacaacta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agttggcctttactgaaattgcattcttcataaagcatgaaaggtacatattaacaacta 444

                                                                       
Query: 245 aacactatatacataaatactgcacaaatatcatgatgtggtcagggaaatacctagcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacactatatacataaatactgcacaaatatcatgatgtggtcagggaaatacctagcca 504

                                  
Query: 305 tatcaacagaggaaaagatgcca 327
           |||||||||||||||||||||||
Sbjct: 505 tatcaacagaggaaaagatgcca 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)