BAC Information

Click to search

BAC

Clone NameMSMg01-211H21
Chromosome7 (Build37)
Map Location 92,670,313 - 92,670,604
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339
Downstream geneVmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211H21.T7 (MSMg01no211_h21.b1)MSMg01-211H21.TJ (MSMg01no211_h21.g1)
ACCAG393190AG393191
length735740
length of high quality
(start - end)
574 (45 - 618)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no211_h21.b1 PHD_FILE: MSMg01no211_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:40 2005CHROMAT_FILE: MSMg01no211_h21.g1 PHD_FILE: MSMg01no211_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:40 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCCCTAAATCTATCTGTCCCTGTGGTGTTTATGTTTGGGAGATTT
TTAATGAATTCCTCTGTTTCTTTGTCAATTATGTATATATTTAGACAATT
TTTCTGTTGTTGATTTGACTTTGGTATGTGATATCTGCCTAGAAAACCAT
CCAGTTTTCTAAAATTTCCAGTTTTATTGAGTATAGACTTTTGTACTAAG
ATCTGATGATTTTTTTTAATTTCCTCTGCTTCTCTTATTATATCTCATTT
TTCGTTTCTGATTTTGTTAATTTGGATACTGCCTCTGGGACCTTTAGTTA
GTTTGTCTAGGGGTTTATCTATGTCGCTGATTCTCTTAAAGAACCAGCTT
TTGGTTTTGTTGATCCTTTGCATTTTTCTCTTTGTTTCTATTTGGTACAT
TTCCACCCTGTGGTTGACTCTTTTCTTCTGTTTATTTCTCCTGTGTGAGT
TTGCTTCTTTTTTGTTCTAGACCTCTCTGGAATGATTTTAAGTTGCTCGC
TTGTTTCTTTACCAGGGTACTGTTCATTACCTTTGCTGTTCCTTATCCTC
TCCTGACTCCTTCAGCACATTCTGGTCAATGGCTGAGCAAATATCTCTCA
AGAGAACCCATATTGCTATGGTTGCATACTTGGGGAAAACACAAGCATAA
CCTGCTCCCTTGTCACAACGACCGTGTTATCCATG
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACTTGTGCATAAGGCT
TGTTTACTAGTTAGGTACAGTGGAAGCCAGCACCATCTTATAATGGTGAT
TGCTCATGGCACAGCTCTCCACACCCATCCTGCAATTAAAAGGTGGGCGT
GAGAAGGGAGGGGCTTCTTGAATACCTTGTCTCTCCTTGCTATGACTGAG
TGTTTCATGAGAGGGGACAAATGACTGCCAACCCCAGGTGAGTTTCCCAT
CTAGCCACTTGTAGTTGTACCACCGGTTCAAGGCTGACTTCTCTCCCAGC
TTTTAGACAGGCCATCCTAATTATATGGGCCACACCAGTTTCCTTAGCCT
GATCAGATGGATAAAACTGAGGGCTGGAGAGCAAGTGTCTTAAAATGGAG
GCATGATTTGAATTCAAGACTTTTTGACTATCTATGGTTCTCCTCCTCTC
TACACATACTGATCTTTGTCAAAGGGCTATTGCTAAATCACAATGAGGAA
GGGACTTGGGCGTCTTTTTCTCTACTGCAAAAGTAGACATTGAACCAACA
GACAGGTTAAGCATGGGAAAGTCTAGGAGGGTGATGAGATTTCCTAAATG
GCTTCAACAGACATGCACAGAGGAGATAGGGACTATTGCCTTGGTTCTTG
TGATCAGACCCAGACACCGTTCCAGACACATTATTTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_h21.g1 MSMg01no211_h21.g1 CHROMAT_FILE:
MSMg01no211_h21.g1 PHD_FILE: MSMg01no211_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:40 2005
         (292 letters)



>mm_chr7_92670016_92670707
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcttgcacttgtgcataaggcttgtttactagttaggtacagtggaagccagcaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 actcttgcacttgtgcataaggcttgtttactagttaggtacagtggaagccagcaccat 530

                                                                       
Query: 61  cttataatggtgattgctcatggcacagctctccacacccatcctgcaattaaaaggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 529 cttataatggtgattgctcatggcacagctctccacacccatcctgcaattaataggtgg 470

                                                                       
Query: 121 gcgtgagaagggaggggcttcttgaataccttgtctctccttgctatgactgagtgtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gcgtgagaagggaggggcttcttgaataccttgtctctccttgctatgactgagtgtttc 410

                                                                       
Query: 181 atgagaggggacaaatgactgccaaccccaggtgagtttcccatctagccacttgtagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atgagaggggacaaatgactgccaaccccaggtgagtttcccatctagccacttgtagtt 350

                                                               
Query: 241 gtaccaccggttcaaggctgacttctctcccagcttttagacaggccatcct 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtaccaccggttcaaggctgacttctctcccagcttttagacaggccatcct 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)