BAC Information

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BAC

Clone NameMSMg01-211I04
Chromosome7 (Build37)
Map Location 106,761,183 - 106,761,534
singlet/doubletsinglet
Overlap genenone
Upstream gene2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1
Downstream geneEG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211I04.T7 (MSMg01no211_i04.b1)MSMg01-211I04.TJ (MSMg01no211_i04.g1)
ACCAG393201AG393202
length1,2701,333
length of high quality
(start - end)
363 (92 - 454)---
definitionCHROMAT_FILE: MSMg01no211_i04.b1 PHD_FILE: MSMg01no211_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:43 2005CHROMAT_FILE: MSMg01no211_i04.g1 PHD_FILE: MSMg01no211_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCATTCGGCGTATACACTCCATAGGGAGAGGATCGCGGAATTCACAA
GAAGGACTGACCCATCCACGCCACCGGAGNACGAAGGCGNGCTCAGGCTG
CACTCAAATGCTTGCATGGAAATGGCCCAATGCAAGACAACAATTAACAA
CAACAATAACAATCACCACCACCACCCCCAAAACCCCCTTTAATTTCAGG
ACAGAAAATGAAAATAGAAACAAATATTTAAATTCATGAGATAGAGTTAA
AATGTGATTATCTCAGTAGATTCAGAAAAAGCATTTGAAAATACAATATC
CATTTATGATTTGTTTTGTTCTGTTTTTAATTTTTTTTCTTTTGTTCAGT
GATCTTGGGCTGGCCTCTCTTACAGAGCTAAGATGACCTTGATTTTTTTA
AGATGACCTTGGACTCCGGATTCCTCTGCTTCACCTGAAGATGTTTTTTT
TTCCCCCACCCCCCGNTGNGCTCCTCCCCCTCAAAAAAAAAGGGGGGCTG
TGCTGGCAAGCCTTCTGCCAACTGAGTTACATCCCTGCCACCTATGACTT
TAAACCAAAAAACTCTTCCAAAAACTTAACAACTTATACCTAGGCGATGG
AGAGATGGCTCACCAGTTAATGCCCTGCCTTCAGTTCCTGACACCACCTC
AGCAGTTCACAACCATCTGTATGGGCAGTCCCAGGGGATCCAACACCCTC
TTTGCACCCCCAAGCCTGCATGTGGTACAAACACCTCTATTCACGTAATA
TATCACACCCATGGAATAAAATTACCCTTATTTACTGTTTCCTTGCCTGG
CGTGCCTGCCCGTTCGCGTGTGCGTGTTTTGCCTTTCCCCTCGAATCATC
CTTTTCCAACTCATAAAATCTAAAACCCATAATGTATATTCCTCTAAAAC
CCTCTCTGGCCCCGCGCCAACCCTTCCCACATACTCCTTTCTAAACCTTC
CACCCCGAATCCTCTTTGGCCCACCAAAACCACCCCCACTTCTTTTTATA
CTCCCCCTCTCCTCTCCTCTAATTCTTTACTCCATTTCCTCCCCCTTCAC
CACCCCACTTCTTCTCCTACTCTCCTTCATTTTCCTCAACACTCTCCCTC
CCCTATTTTTCCTTTCTTTCTCCTATTTTCTCCCCTTCTTCCCCCTACCT
TCCCACATCTCTTCTACATCCGACATCTCTCCTTCTCTCCCCCTTCTCAC
CTACTCTTCTCCCTCTCCTTCTACCTACCTACCTCCTCCACTCCCCTATC
TTCCTTTACTACTTCTCTCT
NCCTAGACGCGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTCGTGACACAGATGGCTGGACCCACTGAA
ATGAGGGGGGTCATAAATTCAAGGAATTCAAAGGCACCACATCCAGAATT
TCTCCTTAACAAAGAGCAAATGGCAAAGTGGTCTAGCAGGTGTGATATTT
AAGGCCTGTAACGAGCAAACGGATAAAAGTCCCCCAGAAAGGTAAAATAA
GAGGAAATATAAAACAAAGAAGTAATTTCCCCATATGCAATTGCACAGAG
AGATTTGCTGGCTCTTGAAAATAATCATGTCTATATTCTTTAGTAAGCAG
AGAGATATAAATTCACCAGGTCCAATGAGCTCTTTAGCTTGGAAAGATTG
TTTTAGCTTCCCCTTAGGGAAATGTCTTATAAAAGGGGTTGTTCTGATTT
TTTTTTTTTCCCCCCCCCCCCAAAACCCCCCCCCCCCCCACAAAAAAAAA
GGGGGTGATGGTNTTTTGAGGCTGGTCATGCCGCTCCCGGTTGATCACTC
CCATCATTTTTCTCCTGAGTAAACAAATCTTGATTCTCCTGAGGCTGTCG
TAAAACTCTCTGGATCCCGCAACAGAGCCGCATAAATTATCTTTCCTCCC
TATCTCCTCATCCCCTTCCCCCTTCTTTCCTTCTTCTCCTCATAGACCTT
TCCCTTCATACTCATTCACCCAGATTCTTACTTCCTACACTCCTTACCTA
CTCCCCCCCCCCTCCTCTCTTTGCTTGTAAACCCCCTAAATATCCCTTCC
TATTTCACTCTCCCTCCTCCCAACCTTTCTCACTCCTAGCTTATCATCTC
TTTTTCATCTACTCCTACTTTTTCCTCATGCAGCTCCAACCCTTCCTCCT
CTCCCTGATTCCACACTCCTCTCCCCCCGACCTACTCCTCTCTTTCAATT
CTTTCTTTCCTCTCTACTCTCTCTCTCTATTCCACCAGTCTTTCCATTAC
TACCCCTCTCCTTACACACTCTCATCATCTTCCTCCTAACCCCTCCATTT
CCTTTCTTCTTCAATCTCTCCTTGCCTTAAACATTTACCTACTTCTTCAC
CTATTTACTGCGTTATTCTTCTCATCCATCTTACCCACTTTTTGTATTCT
TTCTCACTCTTCCCGCTATATCTTAACTTCTCCTCCTCTCTCTTATCCTT
CTCTGTCTTCACATCTAACCATCTCTCTACTTCTACTTCGCAACCTCCCA
TCTCACTTTTCTTCTAATCCCTCCCCTTCCTATCCTTTTCTCTCTTCATA
TATCCTTCTGACTCCTTCAACTTCACTCCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_i04.b1 MSMg01no211_i04.b1 CHROMAT_FILE:
MSMg01no211_i04.b1 PHD_FILE: MSMg01no211_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:43 2005
         (363 letters)



>mm_chr7_106760983_106761745
          Length = 763

 Score =  605 bits (313), Expect = e-177
 Identities = 342/357 (95%), Gaps = 10/357 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaggctgcactcaaatgcttgcatggaaatggcccaatgcaagacaacaattaacaac 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaggctgcacgcaaatgcttgcatggaaatggcccaatgcaagacaacaattaacaac 260

                                                                       
Query: 61  aacaataacaatcaccaccaccacccccaaaaccccctttaatttcaggacagaaaatga 120
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaataacaaccaccaccaccaccaccaaaaccccctttaatttcaggacagaaaatga 320

                                                                       
Query: 121 aaatagaaacaaatatttaaattcatgagatagagttaaaatgtgattatctcagtagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatagaaacaaatatttaaattcatgagatagagttaaaatgtgattatctcagtagat 380

                                                                       
Query: 181 tcagaaaaagcatttgaaaatacaatatccatttatgatttgttttgttctgtttttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagaaaaagcatttgaaaatacaatatccatttatgatttgttttgttctgtttttaat 440

                                                                       
Query: 241 tttttttcttttgttcagtgatcttgggctggcctctcttacagagctaagatgaccttg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttttcatttgttcagtgatcttgggctggcctctcttacagagctaagatgaccttg 500

                                                                    
Query: 301 at-----ttttttaagatgaccttggactccggattcctctgcttcacctgaagatg 352
           ||     |     |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 atagagct-----aagatgaccttggactccggattcctctgcttcacctgcagatg 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)