BAC Information

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BAC

Clone NameMSMg01-212D10
Chromosome7 (Build37)
Map Location 57,362,564 - 57,540,857
singlet/doubletdoublet
Overlap geneNell1
Upstream gene9130015G15Rik, 5330421F07Rik, Dbx1, Htatip2, Prmt3, Slc6a5
Downstream gene4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212D10.T7 (MSMg01no212_d10.b1)MSMg01-212D10.TJ (MSMg01no212_d10.g1)
ACCAG393653AG393654
length723726
length of high quality
(start - end)
236 (129 - 364)282 (81 - 362)
definitionCHROMAT_FILE: MSMg01no212_d10.b1 PHD_FILE: MSMg01no212_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:55 2005CHROMAT_FILE: MSMg01no212_d10.g1 PHD_FILE: MSMg01no212_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,362,564 - 57,362,797)(57,540,577 - 57,540,857)
sequence
NCGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACTTTGACACTTGATTATCTGGCCAGAGATCCCAGGCAT
TTTGAAAAGACATACCTATTTTATCATCTTCAAAGCTTAAAGGTCAAAAA
TACATATACTTGCACTTAGAGTGTTCCAATTTCTGTTAATGTCTGAAAAA
TGGTTCCCAAACTTTTAATGCTTCTGGGTTCTCTGGGTTAAGGATTTGGA
CATAGCCCAAAGGAGAAGGCTTCTTGGTGCTTCATGACATTTGTGGCTCC
AGCTGTGGGGATTAGGTGGTGGTTGAAGTCATCTAGAGGAGCTTCCATGC
TGCTTTATATCATTTATTGGCTGACGCCCCACTTTCTGTGCCAAGAAGAG
CATCTGGCTGATGCCTCCTTGCAGAGAATTAAACTTCCTCCAAGCACGGT
GCCCTCAGGATTCTTAGGTTTCTTAGCAGGTGACTGGTGGATTCAAGCAC
AAGCATTCTGGTACACGGAATCAAAACTTACCTCTTGAATTTTTCACCAA
GCAATACAAAGTCCCCCAGGTCCTATGGGAGTCCTTCTCATTCTTATAGA
GATGTGTCAAGATCGCTTTATGAGATGTTCCTGTGATAGAGGTAAATTGT
GGTCACCCTCTTATAAATGTTACTTTCCTGTCACTTGTTCTGCTGTTAAT
ACCACATTGACTCTTCTGCCCCA
TCCACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGCCCATTTACAAGTGAG
GTGATTAAAAATTCAAAGCCCTAGTCATTTACACAAAGTCACACTGAGGG
GATGGAGTGCAGCAAACATTTGGGTGCTAAAAATGTGATGCCAAGGAGGA
AATGACCGGGATCATCTGATCACACAAACACATTTAGAATTAGTATTGTG
GGAGCTCAACTAAAACTGAAAGTGGTCAAGGCAGAAGGGCTATGGAGGGC
TCAGGTAAGAGGAAGGGTGGGAACACTTGTGTTTGCATCTTGGGTGCTTG
GGTTTGAGCCCTTGTATTTTTCCCCCCCACCACCCAGAGGTAAATGGAAA
GGAGTCTAGCTGTTCCAGTTGGAGGTAAAACAACAGATAGAGCTACTCAG
ACGAAACAAAGGCTAAAATCTGTCTGAGAAAACACTTGGGTAACAAGCTA
TCTAGCTGAGGCAAGCAGACTAAACAGAAGAAGAAAGACTTCTGGAGGCA
TTCTTACATCCGGCATTCAGAATTCCTGCCAATACCCAGCCACAAGGTCA
AAGAGCTAATTTGCTAAAGATGGATAATTCCTCCCTAGTCAAAGCAGGAC
TTCAGAGATAGACTCAAACTGAACATTAACTGGGTTCTGTGAATCGCAAG
GGCCATTCATGCTATAATATGTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_d10.b1 MSMg01no212_d10.b1 CHROMAT_FILE:
MSMg01no212_d10.b1 PHD_FILE: MSMg01no212_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:55 2005
         (236 letters)



>mm_chr7_57362364_57362999
          Length = 636

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaaagcttaaaggtcaaaaatacatatacttgcacttagagtgttccaatttctgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaaagcttaaaggtcaaaaatacatatacttgcacttagagtgttccaatttctgtta 260

                                                                       
Query: 61  atgtctgaaaaatggttcccaaacttttaatgcttctgggttctctgggttaaggatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtctgaaaaatggttcccaaacttttaatgcttctgggttctctgggttaaggatttg 320

                                                                       
Query: 121 gacatagcccaaaggagaaggcttcttggtgcttcatgacatttgtggctccagctgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacatagcccaaaggagaaggcttcttggtgcttcatgacatttgtggctccagctgtgg 380

                                                                 
Query: 181 ggattaggtggtggttgaagtcatctagaggagcttccatgctgctttatatca 234
           ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ggattaggtggtgggggaagtgatctagaggagcttccatgctgctttatatca 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no212_d10.g1 MSMg01no212_d10.g1 CHROMAT_FILE:
MSMg01no212_d10.g1 PHD_FILE: MSMg01no212_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:55 2005
         (282 letters)



>mm_chr7_57540377_57541058
          Length = 682

 Score =  497 bits (257), Expect = e-145
 Identities = 275/281 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagcccatttacaagtgaggtgattaaaaattcaaagccctagtcatttacacaaagtc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 481 ccagcccatttacaagtgaggtgattaaaaattcgaagccctagtcatttacacaaagtc 422

                                                                       
Query: 61  acactgaggggatggagtgcagcaaacatttgggtgctaaaaatgtgatgccaaggagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acactgaggggatggagtgcagcaaacatttgggtgctaaaaatgtgatgccaaggagga 362

                                                                       
Query: 121 aatgaccgggatcatctgatcacacaaacacatttagaattagtattgtgggagctcaac 180
           || |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 361 aacgaccgggatcatctgatcacgcaaacacatttagaattagtattgagggagctcaac 302

                                                                       
Query: 181 taaaactgaaagtggtcaaggcagaagggctatggagggctcaggtaagaggaagggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaaactgaaagtggtcaaggcagaagggctatggagggctcaggtaagaggaagggtgg 242

                                                    
Query: 241 gaacacttgtgtttgcatcttgggtgcttgggtttgagccc 281
           | |||||||||||||||||||||| ||||||||||||||||
Sbjct: 241 gtacacttgtgtttgcatcttgggcgcttgggtttgagccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)