BAC Information

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BAC

Clone NameMSMg01-212G06
Chromosome7 (Build37)
Map Location 68,473,658 - 68,473,942
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041201, LOC100041211, LOC664896, LOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943
Downstream geneB230209E15Rik, EG620934, LOC100041293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212G06.T7 (MSMg01no212_g06.b1)MSMg01-212G06.TJ (MSMg01no212_g06.g1)
ACCAG393764AG393765
length717720
length of high quality
(start - end)
314 (40 - 353)284 (72 - 355)
definitionCHROMAT_FILE: MSMg01no212_g06.b1 PHD_FILE: MSMg01no212_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:09 2005CHROMAT_FILE: MSMg01no212_g06.g1 PHD_FILE: MSMg01no212_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGTTTTATGTTTAATACCGAATTCTTTACAGAATGAAATAAAGTTTTTAC
TGGAATAAGATGGCCCATTGTCTGTCTTAATGAGTTTAGGCAATCCCATG
GCATTAAATGCATGTAGGCAATGATCAATTACGTTTTTTGAAGCTTCTCC
TGTATGCAGAGAAGCAAAAAGAAATCCTGAACAAGTATCAATGCAAACAT
GTATATATTTTAGTTTTCCAAATTCTGCATAATGGGTTATATCCATTTGC
CAAATATGATTAGGCATAAGGCCTCTAGGATTAACTCCTAGATGCGGCAC
TGTATATAAAGCACCACCCCCACGACATTGTTTTACAATCATTCTCGCTT
GTTCCTTTGCGATCTTATGTCGGAGCCTTAGGGTATGGCTAGAGAGATGA
AACCTTTCATGATCACGTTGGGCCAAAGCAACCCGATCTGAAACTAAGGC
TTCTCCTATTAGAGCTCTGTCAATGCGATCATTACCCTCTGCCAGAGGTC
CAGGAAGACCAGAGTGAGACCGTATGTGGTCAATATAAAACGGATTTTTC
CGGGTGAGAATGATGTTTTGTAATTCTGAAAATAAGATCCTGACGGTGTA
TTGAAGTTGAACGTACCACAGGTTTCCCATAAAGGTACTGACTGAGCAAC
ATATAAACTGTCCATAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTTTCTTTTTATTTGCCAGTTGCTGTC
ATATATGCAAGATAAGCTTCCAATAGCAAACTAATGTATGTATGAGTTGA
ATTATTGACACAATTATTAGCTTACTTACAGATTATAGATTTAACCAAAA
ATATATTGGATCAAATGAAATGTTTATTCCTCTTCCTGTTTTGGTTTGGT
TGATTCTAGAAGGCCAGAAAATAGTAGTATTTATTTTAGTTTACTGGAAT
TGGGTAAAGCAATCACTTTAAGAGCACAGAATATAATCAATAAAAGCATG
CATTATATATAGCCCCGCTCACTCAGTCTGAGAGGGTCAGGTAAAGTAAA
GAAGTTAAACACTGCGAATCTGATATTGGCTGCACTGTTCAGAACAACTA
GAGTGCTTCTACTCAATCCTTATTTTTCATTGGTAAGAATGTTATGTGGT
ATCTTCTATTACTTCTTTCTTGGTTTTCACAATATTTTCCCATTTATTTA
GAGCAGGCCTTATGTTACATATGGTCTGATCTGTTTAGCTATATCTTCTA
CTCATATGACAAATCACTACTGTTCTAATAGATAATGGATCTGTTACAAA
TGTCTTACCAAGAACTCATGGCTTATGTACAATAATCATATGTTTTTGCA
AATTTAAACGCGGCACTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_g06.g1 MSMg01no212_g06.g1 CHROMAT_FILE:
MSMg01no212_g06.g1 PHD_FILE: MSMg01no212_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:09 2005
         (284 letters)



>mm_chr7_68473458_68474142
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%), Gaps = 1/285 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttttctttttatttgccagttgctgtcatatatgcaagataagcttccaatagcaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agttttctttttatttgccagttgctgtcatatatgcaagataagcttccaatagcaaac 426

                                                                       
Query: 61  t-aatgtatgtatgagttgaattattgacacaattattagcttacttacagattatagat 119
           | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 425 taaatgtatgtatgagttgaattattgacacaattactagcttacttacagattatagat 366

                                                                       
Query: 120 ttaaccaaaaatatattggatcaaatgaaatgtttattcctcttcctgttttggtttggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttaaccaaaaatatattggatcaaatgaaatgtttattcctcttcctgttttggtttggt 306

                                                                       
Query: 180 tgattctagaaggccagaaaatagtagtatttattttagtttactggaattgggtaaagc 239
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cgattctagaaggccagaaaatagtagtatttattttagtttactggaattgggtaaagc 246

                                                        
Query: 240 aatcactttaagagcacagaatataatcaataaaagcatgcatta 284
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aatcactttaagagcacagaatataatcaataaaagcatgcatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space:   185900
Effective search space used:   185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)