BAC Information

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BAC

Clone NameMSMg01-212K13
Chromosome7 (Build37)
Map Location 127,087,057 - 127,087,630
singlet/doubletsinglet
Overlap geneDnahc3
Upstream geneIqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1
Downstream geneTmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212K13.T7 (MSMg01no212_k13.b1)MSMg01-212K13.TJ (MSMg01no212_k13.g1)
ACCAG393932AG393933
length7151,118
length of high quality
(start - end)		674 (42 - 715)---
definitionCHROMAT_FILE: MSMg01no212_k13.b1 PHD_FILE: MSMg01no212_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:29 2005CHROMAT_FILE: MSMg01no212_k13.g1 PHD_FILE: MSMg01no212_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTAAGTTTCATTGTGGTTTATATTCAACTGTTTCTTATTTTTCACACGTT
ATTTCTTCCATGGTAACACGTGATCCTTCTCCCATGAGCCTTCAGGCATC
ATGGGGCATATTTGTAATTTCAGCACTTGGGAGAAGGATCACATGTTTGA
GTTAGTCTGGACTACATAGCAGGAAACACTGAATAACAACAATAATGATG
ATGACAACAACAATAACCACGACAACGATGATAACGATGATGATGACCAC
AATGATATACAATAATAATAATGATAATGATGATAATAATACATAGTCTG
TGAGTTTAGAGATAATGTCAAACAAGAGTTAGCTGTTGTTCCATTTGCCA
GGGCCTCTAGATATCTAAAGCTTCACCAAAAGAAATTCTGATTTAGCAGT
TCACAGAGGCTGATAAATTTATTTTAAAATCCAAAATGTCAATGTGTCTC
TCCTTTTGCATCATGACTATTATTTGGTCTTAGCTGGCTGTTCTTTCAAA
AACTTTTCTTCCTGGTCTCAGGTCTGCTGAAGTTTGCTGATGATGTTAGC
ATGGGAGGCACTAAAACACAGACTATCTCCCTTGGTCAAGGCCAAGGTCC
TATTGCTGCCAATATGATCAACAAAGCCATCCATGAAGGGACCTGGGTGG
TCCTACAGAACTGCC

CGTCTCGGCGAGCGAGGCGCTGTGCCGGAGCGCGGGCGGCGGTACGATGC
GTCGAGAGTGGACAGCAGCGGTAAAGGTAGTCTGACTGTATATTCCATGG
TACACGCGCACAGACATACAAGATGAAGAGGAATTGATACTCCTCCCAAA
CACGCTCACCACATATTTTATTTGTCCTCGGTCACCGTTTCTATGAGTGA
GTTCACAATATTAATATATGTATGAGTCGCACCAGCCGACTCTATTGAGT
GAGGTTCGGTAGCTTAATTAGACCGCCGCTGTATGGTCAACGAAGGAGTA
GACAGTGAGGACCGCGTCTAATTTGCTAAATACAAGTTGGCATGGTACGG
ACGCATAAACTAGGAATAATGCATCCGTGTATGGTATCACGTACTTCCTC
TCTACNCCCNTCACAATGACACCGGGCCCGCTATCTGCGCGACACTATAA
TAATATATACTCGCGGCGGATGGAGCAGAAGATCCCACGCACCGAATTGG
AAATAACTGTGCATCCAGAGTTAGGTTTGTGCGTGTGCGTGCCATATACG
ACGATACTTGATTTGGATGAGAAAGTATAGAGAAAAGGGGGCAGACGCCG
GGCTAAAGTGGGAAGTATACCGTAGTAACGGCAAGGCAAATTACNATATC
ATTTCGTTGAGATGTGGACGTCGGTGCCGTGCGGGATCCTACTCTTATTA
TACTTCGCAACTGCATCTCGTTTACATATATCGACAGAGTCAGCTACGTT
GTGCTGAAACGATTGCCCAAAGTCGAGTGAATGGTGATGTATATTTAATC
GGGAGATAAATTGATCGACACCATAAATATTCTAGGAAGTGTGTGANCAG
ACAGAGAGCATTAGAAGAGGAAGTAAACAACCATAGTCTAATATATAAGA
CGAACACGGACTGATTAAGTAAAGGTGATGTATCGCACACATCCGCGATC
AGACGTGAGTGTTAGGTGGAGAAACCCGCACGACGGATAGACGGGATACA
CGGTCGACAAGCCCACGCCCCTCAGATCGTATATGTGACGCGCCACAGCC
ACCGTTACATACNCTTATGCGCACCGCACCGCCGCGTTAGCGTCTAACGA
CACATATTGGGTTGTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_k13.b1 MSMg01no212_k13.b1 CHROMAT_FILE:
MSMg01no212_k13.b1 PHD_FILE: MSMg01no212_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:29 2005
         (674 letters)



>mm_chr7_127086557_127087630
          Length = 1074

 Score = 1094 bits (566), Expect = 0.0
 Identities = 572/574 (99%)
 Strand = Plus / Minus

                                                                        
Query: 101  tcaggcatcatggggcatatttgtaatttcagcacttgggagaaggatcacatgtttgag 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 tcaggcatcatggggcatatttgtaatttcagcacttgggagaaggatcacatgtttgag 1015

                                                                        
Query: 161  ttagtctggactacatagcaggaaacactgaataacaacaataatgatgatgacaacaac 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 ttagtctggactacatagcaggaaacactgaataacaacaataatgatgatgacaacaac 955

                                                                        
Query: 221  aataaccacgacaacgatgataacgatgatgatgaccacaatgatatacaataataataa 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954  aataaccacgacaacgatgataacgatgatgatgaccacaatgatatacaataataataa 895

                                                                        
Query: 281  tgataatgatgataataatacatagtctgtgagtttagagataatgtcaaacaagagtta 340
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  tgataatgatgataataattcatagtctgtgagtttagagataatgtcaaacaagagtta 835

                                                                        
Query: 341  gctgttgttccatttgccagggcctctagatatctaaagcttcaccaaaagaaattctga 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834  gctgttgttccatttgccagggcctctagatatctaaagcttcaccaaaagaaattctga 775

                                                                        
Query: 401  tttagcagttcacagaggctgataaatttattttaaaatccaaaatgtcaatgtgtctct 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  tttagcagttcacagaggctgataaatttattttaaaatccaaaatgtcaatgtgtctct 715

                                                                        
Query: 461  ccttttgcatcatgactattatttggtcttagctggctgttctttcaaaaacttttcttc 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  ccttttgcatcatgactattatttggtcttagctggctgttctttcaaaaacttttcttc 655

                                                                        
Query: 521  ctggtctcaggtctgctgaagtttgctgatgatgttagcatgggaggcactaaaacacag 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  ctggtctcaggtctgctgaagtttgctgatgatgttagcatgggaggcactaaaacacag 595

                                                                        
Query: 581  actatctcccttggtcaaggccaaggtcctattgctgccaatatgatcaacaaagccatc 640
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  accatctcccttggtcaaggccaaggtcctattgctgccaatatgatcaacaaagccatc 535

                                              
Query: 641  catgaagggacctgggtggtcctacagaactgcc 674
            ||||||||||||||||||||||||||||||||||
Sbjct: 534  catgaagggacctgggtggtcctacagaactgcc 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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