BAC Information

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BAC

Clone NameMSMg01-213C11
Chromosome7 (Build37)
Map Location 122,776,722 - 122,938,099
singlet/doubletdoublet
Overlap geneSox6
Upstream geneCalca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213C11.T7 (MSMg01no213_c11.b1)MSMg01-213C11.TJ (MSMg01no213_c11.g1)
ACCAG394246AG394247
length747757
length of high quality
(start - end)
273 (35 - 307)293 (64 - 356)
definitionCHROMAT_FILE: MSMg01no213_c11.b1 PHD_FILE: MSMg01no213_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:07 2005CHROMAT_FILE: MSMg01no213_c11.g1 PHD_FILE: MSMg01no213_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,937,830 - 122,938,099)(122,776,722 - 122,777,013)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACTG
GGGATCTAATCTTCTGCCACACTTCATGTTGTGACAGACTTTTAGAAGAT
TTCTCATCTTGCCTCTTTTTGAAAGATTTAAGAATGTTGAATTGTTGCCA
AGGTTTTTTGTGTGTGTGTGTATGTGTGAGAGAAAGAGATTTAGTAATTT
AAGGTACTAGGTACCACCCCGATGAATTTAATTTCAATACATTTATTGGG
GCTATAATTCAGTAAGCGTGGTTCACCTGGTCTGACTAGTATTGTCCTCA
TGCCCGAGGTTAGGTTGATCTGTCTACTGTGTGGTGTCTGATCAATATCT
GTATTCCCTTGGCACACCCCCCCACACTTGCTATATTTAGGCTTCTTGAT
AAATTTAGTCACCTCTTGTCTTAATTACTTTTCTTCTGCTGTGACCAATC
ACCATTACCTAGGCTACTTATTTAAGATACAGTTTCATACGATTTTCAAA
GGACAGGTTCTGTGATCATGATAGTATGAAACATGTCATTATTCTTGTAT
TATAATAGTAGTATCCCTGAATGTCTACTTCTGATCCATAAGCTTGTACA
TGTACATATATCCTTATATATATTTATTTACTACTTACCCCTCCATATTA
TATCCTTTTATATGGTTTGTTCACCCCTTCTCTCTACCTTATTTCTTCTA
TATTTTGTTGTGACCTTCCTTCTCGGCTCGAAAAACGTGATAATGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCATAATGACTAGACTAGATTACATTCCCACCATCTAA
TGGATAAGGTTTTCTTTTTCCCTGGGTCCTCACTAGTACTTATTCCTACT
AGGGTGATAAAGAGTCATAGAACATTTTTGATTTATATATCCTTGATGAT
TAAAGATGTTGAAAACTTTCATGATAGATTGACTTAAAAAAAAAGAAACT
TTTTGAGGACCATTCAATTCATTTTCCCCTTCCTGTATTTGGTAATTGTT
CTTTTGACATTTAATTTTTAAAGTCTTTTATATCTATCATTTATACTTAT
CTCTGTATTAGACTTACGCACCGCAATGACCTTCCTCCATCCTGTATGGT
ATCTCTTCACCACCGGCTGTTGCTTCCTCTGTGGAATATAAGGTTTTTAA
TTTGAGGCAATCCCTTTTTGTTGTTTCTTGTTATTATTCCCATTAGTTAT
TTAGAAAATTATTGCCTGTGCCTGCATCTTGAATATTTTCCCTCCTGAAT
TTCATATTTTTGGGTATTGCCTTCATACCTTTTATCCATTTTTTAATGAT
TTTTGTGCTTTGATAAGAGTTAAGGAATGCTCTTTTCAGTCATTTTATAT
TAGTAACATCTTAATTTTGCTACGTCCTATTATTTGAAAGAGACTAATAT
ATTCCTTCCCGAGTTATGTTTCCTGTCCATCCTTTGCAACAACCCTGATT
TATCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_c11.b1 MSMg01no213_c11.b1 CHROMAT_FILE:
MSMg01no213_c11.b1 PHD_FILE: MSMg01no213_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:07 2005
         (273 letters)



>mm_chr7_122937627_122938299
          Length = 673

 Score =  499 bits (258), Expect = e-146
 Identities = 267/270 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcactggggatctaatcttctgccacacttcatgttgtgacagacttttagaa 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggaattctcactggggatttaatcttctgccacacttcatgttgtgacagacttttagaa 414

                                                                       
Query: 64  gatttctcatcttgcctctttttgaaagatttaagaatgttgaattgttgccaaggtttt 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gatttctcatcttgcttctttttgaaagatttaagaatgttgaattgttgccaaggtttt 354

                                                                       
Query: 124 ttgtgtgtgtgtgtatgtgtgagagaaagagatttagtaatttaaggtactaggtaccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgtgtgtgtgtgtatgtgtgagagaaagagatttagtaatttaaggtactaggtaccac 294

                                                                       
Query: 184 cccgatgaatttaatttcaatacatttattggggctataattcagtaagcgtggttcacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 293 cccgatgaatttaatttcaatacatttattggggctataattcagtaagtgtggttcacc 234

                                         
Query: 244 tggtctgactagtattgtcctcatgcccga 273
           ||||||||||||||||||||||||||||||
Sbjct: 233 tggtctgactagtattgtcctcatgcccga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no213_c11.g1 MSMg01no213_c11.g1 CHROMAT_FILE:
MSMg01no213_c11.g1 PHD_FILE: MSMg01no213_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:07 2005
         (293 letters)



>mm_chr7_122776522_122777214
          Length = 693

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataatgactagactagattacattcccaccatctaatggataaggttttctttttccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataatgactagactagattacattcccaccatctaatggataaggttttctttttccct 260

                                                                       
Query: 61  gggtcctcactagtacttattcctactagggtgataaagagtcatagaacatttttgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtcctcactagtacttattcctactagggtgataaagagtcatagaacatttttgatt 320

                                                                       
Query: 121 tatatatccttgatgattaaagatgttgaaaactttcatgatagattgacttaaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatatccttgatgattaaagatgttgaaaactttcatgatagattgacttaaaaaaaa 380

                                                                       
Query: 181 agaaactttttgaggaccattcaattcattttccccttcctgtatttggtaattgttctt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaactttttgaggaccattcaattcattttccccttcctgtatttggtaattgttctt 440

                                                               
Query: 241 ttgacatttaatttttaaagtcttttatatctatcatttatacttatctctg 292
           |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ttgacatttaatttttaaagtcttttatatctatcatttatatttatctctg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)