BAC Information

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BAC

Clone NameMSMg01-213I11
Chromosome7 (Build37)
Map Location 36,802,630 - 36,910,501
singlet/doubletdoublet
Overlap geneLOC100043872
Upstream genePepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507
Downstream geneEG668988, LOC668507, Tshz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213I11.T7 (MSMg01no213_i11.b1)MSMg01-213I11.TJ (MSMg01no213_i11.g1)
ACCAG394492AG394493
length744744
length of high quality
(start - end)
146 (203 - 348)202 (64 - 265)
definitionCHROMAT_FILE: MSMg01no213_i11.b1 PHD_FILE: MSMg01no213_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:34 2005CHROMAT_FILE: MSMg01no213_i11.g1 PHD_FILE: MSMg01no213_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,802,630 - 36,802,775)(36,910,300 - 36,910,501)
sequence
GCGCTAAACGACTCCTATAGGGCGAGGATCCGCGGAATTCAATAAAATGG
AGGTGATCTGTGCTTATTTATAGGGCAAATGGATACATCCAGCCCCGGCC
GTCAGAGCCCACACTTTCTCATTTACACTGTACAGCCCATCTCTGTACCC
AGAGTGGTTCTGGGAGCTGTGAGCAACGGCAGCAGAGGCAGAAACCAGAG
CAGTGCTGGCGATATGTGCATACCGCTCTTCATCTGAGGTTCTAGAATCT
TCCAAGCTAATTGCTGTAAGGGTTTTTGTTCTTGTGCACTGAAAACCCAC
GGCTGCAATCTCTTCCTTATTTACACCTCACTTTTGAGGCTGAAAGACTG
TTTTTTGTTATAACACTCCCCCGCCACTTCTCAGACCTCTGAAAAAATAA
TTTTCTGCCACCCTAAATCTGGAAGATGTAGTTAAGTACTGAAAACAAAT
TTATTGCTAATTTTTCCCTTAATTGCCTTCCCCGAGAACAACGCTTCGTG
CTTACTGGCGAAATTACTGTCATCTGATGATTCTTTAAAAAGCACAAAGA
CTTGTATTTCAGAAGCTCACCTGAAAAAGTCCAAAGTCTCTCTTAATTCC
TTCTCCCGTCTGCTTGGCATGTCCTCCTTGAATAAAAGGTTCTATCATGA
TCCTACTGCTTGTCCACTCACTCACACACCTTCCAAACACCAACTGGTAT
AATCCATTTTAACTGCTAACTTCTCTAAACTAATGGCCCTCCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCTGTGTACACGGAAGACAGAGTTCTTTCTTTGAGAT
ATCTCTTCCCTTGGTTTGTACCAGGAAAGGGCTTAATTGAAAAGCTTGTC
CAAAGAGCTTTGGAGATGACATTGTGTACAAAGATCTTGCCAATAAGTGC
AAGAATGGGATCCCCAGAACCCAGGTCAAAGGTTAACAGGTGTGGCGGCT
TCCTGTTCCCAACAGTCAGGAGGTGGGCCTGTAGGATCCTTACTGCCAGA
TCACTGGCTATAGTGAGCAAATCATAGACCTCCAGGCTTGCTGTGAGAGT
CTATCTTTGTAACCCCCTGCCCCGCAATTGATAACATGTCTGATGTCAAC
CTCTGCCCCCCGACACACAAAAACAGGAATGCATGCGCGCCGACACACCC
ATGCTCATTCCTAAAACTTAATAACGAAAAAAGCTTTTATATAAAGATTT
GAGTCATGTATGGGGGTACATGCCTAAAATCCCAACACTTTGACAGGCTG
AGACTATTAAATCATCGGTTCATATCCAGTGCAAGCTATTTAACATATAT
CTGGTCATTCTGTGCTATCCCCTATGAGATTCAGTCTCAGTTTAATTTTT
TTCGGTACTTTCCTGTTTTTTTTCCACCCTGATTTGTTCATGTATCATTT
ATGACCATGATATTTATTCACTATGCCTTTACCTTTTAATTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_i11.b1 MSMg01no213_i11.b1 CHROMAT_FILE:
MSMg01no213_i11.b1 PHD_FILE: MSMg01no213_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:34 2005
         (146 letters)



>mm_chr7_36802430_36802975
          Length = 546

 Score =  267 bits (138), Expect = 2e-76
 Identities = 144/146 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgctggcgatatgtgcataccgctcttcatctgaggttctagaatcttccaagctaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgctggcgatatgtgcataccgctcttcatctgaggttctagaatcttccaagctaatt 260

                                                                       
Query: 61  gctgtaagggtttttgttcttgtgcactgaaaacccacggctgcaatctcttccttattt 120
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 261 gctgtaagggtttttgttcttgtgcactgaaaacccacggctgcaaacacttccttattt 320

                                     
Query: 121 acacctcacttttgaggctgaaagac 146
           ||||||||||||||||||||||||||
Sbjct: 321 acacctcacttttgaggctgaaagac 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no213_i11.g1 MSMg01no213_i11.g1 CHROMAT_FILE:
MSMg01no213_i11.g1 PHD_FILE: MSMg01no213_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:34 2005
         (202 letters)



>mm_chr7_36910100_36910701
          Length = 602

 Score =  352 bits (182), Expect = e-102
 Identities = 197/202 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgtgtacacggaagacagagttctttctttgagatatctcttcccttggtttgtacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cctgtgtacacggaagacagagttctttctttgagatatctcttcccttggtttgtacca 343

                                                                       
Query: 61  ggaaagggcttaattgaaaagcttgtccaaagagctttggagatgacattgtgtacaaag 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 342 ggaaagggcttcattgaaaagcttgtccaaagagctttggagatgacattgtggacaaag 283

                                                                       
Query: 121 atcttgccaataagtgcaagaatgggatccccagaacccaggtcaaaggttaacaggtgt 180
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atcttgccaataagcgtaagaatgggatccccagaacccaggtcaaaggttaacaggtgt 223

                                 
Query: 181 ggcggcttcctgttcccaacag 202
           ||||||| ||||||||||||||
Sbjct: 222 ggcggctgcctgttcccaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)