BAC Information

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BAC

Clone NameMSMg01-214M15
Chromosome7 (Build37)
Map Location 13,009,768 - 13,010,328
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551
Downstream geneEG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214M15.T7 (MSMg01no214_m15.b1)MSMg01-214M15.TJ (MSMg01no214_m15.g1)
ACCAG395286AG395287
length717717
length of high quality
(start - end)
561 (127 - 687)334 (384 - 717)
definitionCHROMAT_FILE: MSMg01no214_m15.b1 PHD_FILE: MSMg01no214_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:13 2005CHROMAT_FILE: MSMg01no214_m15.g1 PHD_FILE: MSMg01no214_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCACCATACCTGGCCTAGTTTATATCCCTGATGAAATGACTCA
TTAGTCCATACATATACTATTTACCCCCTGGTTTTCAAAAGATACAATGT
AATAATTATTTAAAATATTTGTCTTTGGGTCTGAAAAGATAACCCAGTGG
TTAAGGGCATTTGTTGTTCTTGTAGAGGGCAGGATTCATTTTTCAGCACC
CGATCTTTAGCTGATGTTCCAGGGAACTTAACAATTTCTGGTCTTCACAG
GCACCTGAAAATACACGGTACACATACATACATGCAGGCAAACGCCCTCT
CAAAAAGCTTAGGAATAAAACTTTTAACACACCTGAGAGTTTAGTCCTCT
GAGAGTTTGGTTCAACGCTCTAGAACCCAAACTTCCAGGACATCTTGAGT
CCAACAGAAGTATCTATAACACCTAAAGCCTATTTGTTGACACAGACAGC
TGTGTTCATTTAAAGAACTATGTCTCAACAGTCATCTGAAGGATGGACTC
AGAGATAACAAAACAGACATTCCACCTCTTCCACCACTGACAAAGGCCTT
TTGCTAAGTTTCACTCGCATTTCCAGTCCCCTCAACTGATATCTGAGATC
GTGTCATCCTTTCCAGAATATGATTCAGCACTGAGGGACACCCAAGGTGT
TAACCTGAAACACACAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAGGCTGACATGGAAAAACAC
TAGAAAACAACTCAAATAACACTACCAAAGAAATCATATTTTTTTCTGTT
TTTTCGGACAGGGTCTCTATGTAGCCTTGCCTGTCCTACAACTCAATATG
TAGACCAGGTTAGCCTTGAACTCACAGAGATTCACCTGCCTCTGCCTCCC
AAGTGCTCAGAATTAAAGGCATGCACCACCACACCCAGTGAAATTACCCA
TCGAATAAGATTGCTTTATCTGATTTTAGAGATAAGACAACAGTGGCCAC
ATGGCTAAGTGATCTATCTAATCTTGACCACCTGAAACATTGATATGATG
GAGGGAGAAAACTGACTCCTCCAAGTCATTTTCTGCCCTCCATACGGGTA
CCCACCTACCCCTATCTGACCCCCCCAACCCACACAAATAAATATAATTT
AAAATTTTAAGAATTCTAACAACCAAACATTACAAAGGTAAAAATGTCAT
TAGTTACAAATGTGTACTGCTAACATTCAATGCATAAATGTGTAAAAGAG
AACAAGCCATACAAAAGCAAAGTTTTTGAATAGTAATGAGGTTAAATTAG
TATTAATTCAATGAGACTATTATAGGAATGATAAGTGTAATCCTCAGTAC
AACAATAAGGCAGTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_m15.b1 MSMg01no214_m15.b1 CHROMAT_FILE:
MSMg01no214_m15.b1 PHD_FILE: MSMg01no214_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:13 2005
         (561 letters)



>mm_chr7_13009568_13010528
          Length = 961

 Score =  969 bits (501), Expect = 0.0
 Identities = 546/561 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggttttcaaaagatacaatgtaataattatttaaaatatttgtctttgggtctgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggttttcaaaagatacaatgtaataattatttaaaatatttgtctttgggtctgaaa 260

                                                                       
Query: 61  agataacccagtggttaagggcatttgttgttcttgtagagggcaggattcatttttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agataacccagtggttaagggcatttgttgttcttgtagagggcaggattcatttttcag 320

                                                                       
Query: 121 cacccgatctttagctgatgttccagggaacttaacaatttctggtcttcacaggcacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacccgatctttagctgatgttccagggaacttaacaatttctggtcttcacaggcacct 380

                                                                       
Query: 181 gaaaatacacggtacacatacatacatgcaggcaaacgccctctcaaaaagcttaggaat 240
           ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| 
Sbjct: 381 gaaaatacatggtacacatacatacatgcaggcaaacaccctctcacaaagcttaggaag 440

                                                                       
Query: 241 aaaacttttaacacacctgagagtttagtcctctgagagtttggttcaacgctctagaac 300
           ||||||||||| |||||||||| |||||||||||||||||||||||||||  | ||||||
Sbjct: 441 aaaacttttaagacacctgagactttagtcctctgagagtttggttcaacattttagaac 500

                                                                       
Query: 301 ccaaacttccaggacatcttgagtccaacagaagtatctataacacctaaagcctatttg 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ccaaacttccaggacatcttgagtccaacagaagtatctataagacctaaagcctatttg 560

                                                                       
Query: 361 ttgacacagacagctgtgttcatttaaagaactatgtctcaacagtcatctgaaggatgg 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttacacagacagctgtgttcatttaaagaactatgtctcaacagtcatctgaaggatgg 620

                                                                       
Query: 421 actcagagataacaaaacagacattccacctcttccaccactgacaaaggccttttgcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actcagagataacaaaacagacattccacctcttccaccactgacaaaggccttttgcta 680

                                                                       
Query: 481 agtttcactcgcatttccagtcccctcaactgatatctgagatcgtgtcatcctttccag 540
           |||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 681 agtttcactcacatttccagtcccctcaactgagatctgagatcgtatcatcctttccag 740

                                
Query: 541 aatatgattcagcactgaggg 561
           ||||||||||| |||||||||
Sbjct: 741 aatatgattcaacactgaggg 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)