BAC Information

Click to search

BAC

Clone NameMSMg01-216A07
Chromosome7 (Build37)
Map Location 37,632,253 - 37,670,895
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043872, EG668988, LOC668507, Tshz3
Downstream geneLOC100043874, Zfp536, LOC100043453, EG627844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216A07.T7 (MSMg01no216_a07.b1)MSMg01-216A07.TJ (MSMg01no216_a07.g1)
ACCAG396057AG396058
length744737
length of high quality
(start - end)		700 (45 - 744)634 (75 - 708)
definitionCHROMAT_FILE: MSMg01no216_a07.b1 PHD_FILE: MSMg01no216_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:50 2005CHROMAT_FILE: MSMg01no216_a07.g1 PHD_FILE: MSMg01no216_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,632,253 - 37,632,948)(37,670,262 - 37,670,895)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGGTCAAAACCTCCCTCACTTAAGTGATTTCTGTCAGGTATTTG
GTCACAGGTAAAGAAACTAACAGAGAAATCTAGGGCATTTCCCCATCTGC
TTTTTTCTGTAACACCAAAATGTTGCAACAGAACAGATGTTATCTGAGTG
ACTCACATGCTCCCCAGCCCCAAAATCCATAGAAGATGAGTATCTCTCTT
GGATCCTCTCATTCTGCAGCCCTTTTGTCTGTGTTCTGTGAATGTCCACT
GAAAATGTAAAACCTTGCACGAAGAGAGACCAAGGAAATATGCCTTCTTG
GTCCCGGGTTGCCATGAAGTTGCCATTACTAAGTGGCCATTTTCCTTTCT
TCAGTAATACATTGCTGTGTGTCAAACCAGAGGATGCACCATGCTAAGAC
AATGTCCTGCCATGGAGTCCAGTCTCAGAATGCTGTTCCTAAAGAATAAT
GAATTCTAATCTCTGTCATGTCCTCACACTCTCATTAGAGAAAGGAATAC
AAGAAAGTTGAAGGTGTTTCTGAGACAATGGTGATGATGATCCCTAATAT
TATGAATGCCTGTCTCACCCTTGCTAGGCTTTCTGACCCCTTTGGGAAGA
GCATGCTCTTATTACCTCTTTGCACTGGTGCTGCCTATGTTAGCATTTGT
GTAATGAGTCAAATTCCTCAATCTATCTATCCATTCATCCATGT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAATAACCAACTGCATTTTCCTGAAA
GGTGTGAGACTCCTCCCAGTATGCCCTCCGTGTAAACTAACAAGACATTC
CCAGGGAGCTGCCCATACCTCTGCTCCAGGGCGGGTTAGAACCAAGCTTA
AGCTGATAGTGGAAGACTCTCGGGTGTCTATTTAATATGAAGAGGGTTTG
ACTCCTGGATCTTTATCCACCTGCGTGGGTTCAGTGATCTCAATGGGAGC
TCCATCTTTTCTAGTGATCGCACCTCTGAAGCGATGTTATAAGGCCAAGA
AATTGATTTCCTGGGTTGCAAAAATCATTCCCAGGTCATCAGTGTCAAAG
CCAAGTGTTTTGTGGATCTCATTTTTTTTTCCCTTTAAAGTTAAAGTGTA
GTCTGTTTTGTATGTTGAACCATTAAAGGTACTAGGAATTGCAAGTCTAT
CCCTACATGTCACGGTTTAACACACACAGCAGATTGACTGACTCTCTCCT
TAACTATGGCCTGCAGCATCGATCTCCACCAAGCAAGGAGCTGAGGTCCA
GCAGAGAGAGGATGCAACGGTGAGCATGAGGTTGGCAGACACCTCCTGCT
GCCAGGTGTCCCTGGGTCCAGGAGTCCCTTAGGTAGTGATATAGGGCCAA
GGGGATAATAGTGGATAATGGGCATTTTTCTGTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_a07.b1 MSMg01no216_a07.b1 CHROMAT_FILE:
MSMg01no216_a07.b1 PHD_FILE: MSMg01no216_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:50 2005
         (700 letters)



>mm_chr7_37632049_37633148
          Length = 1100

 Score = 1346 bits (696), Expect = 0.0
 Identities = 696/696 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgggtcaaaacctccctcacttaagtgatttctgtcaggtatttggtcacagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgggtcaaaacctccctcacttaagtgatttctgtcaggtatttggtcacagg 264

                                                                       
Query: 65  taaagaaactaacagagaaatctagggcatttccccatctgcttttttctgtaacaccaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaagaaactaacagagaaatctagggcatttccccatctgcttttttctgtaacaccaa 324

                                                                       
Query: 125 aatgttgcaacagaacagatgttatctgagtgactcacatgctccccagccccaaaatcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgttgcaacagaacagatgttatctgagtgactcacatgctccccagccccaaaatcc 384

                                                                       
Query: 185 atagaagatgagtatctctcttggatcctctcattctgcagcccttttgtctgtgttctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagaagatgagtatctctcttggatcctctcattctgcagcccttttgtctgtgttctg 444

                                                                       
Query: 245 tgaatgtccactgaaaatgtaaaaccttgcacgaagagagaccaaggaaatatgccttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaatgtccactgaaaatgtaaaaccttgcacgaagagagaccaaggaaatatgccttct 504

                                                                       
Query: 305 tggtcccgggttgccatgaagttgccattactaagtggccattttcctttcttcagtaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggtcccgggttgccatgaagttgccattactaagtggccattttcctttcttcagtaat 564

                                                                       
Query: 365 acattgctgtgtgtcaaaccagaggatgcaccatgctaagacaatgtcctgccatggagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acattgctgtgtgtcaaaccagaggatgcaccatgctaagacaatgtcctgccatggagt 624

                                                                       
Query: 425 ccagtctcagaatgctgttcctaaagaataatgaattctaatctctgtcatgtcctcaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagtctcagaatgctgttcctaaagaataatgaattctaatctctgtcatgtcctcaca 684

                                                                       
Query: 485 ctctcattagagaaaggaatacaagaaagttgaaggtgtttctgagacaatggtgatgat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctctcattagagaaaggaatacaagaaagttgaaggtgtttctgagacaatggtgatgat 744

                                                                       
Query: 545 gatccctaatattatgaatgcctgtctcacccttgctaggctttctgacccctttgggaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gatccctaatattatgaatgcctgtctcacccttgctaggctttctgacccctttgggaa 804

                                                                       
Query: 605 gagcatgctcttattacctctttgcactggtgctgcctatgttagcatttgtgtaatgag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gagcatgctcttattacctctttgcactggtgctgcctatgttagcatttgtgtaatgag 864

                                               
Query: 665 tcaaattcctcaatctatctatccattcatccatgt 700
           ||||||||||||||||||||||||||||||||||||
Sbjct: 865 tcaaattcctcaatctatctatccattcatccatgt 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no216_a07.g1 MSMg01no216_a07.g1 CHROMAT_FILE:
MSMg01no216_a07.g1 PHD_FILE: MSMg01no216_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:50 2005
         (634 letters)



>mm_chr7_37670062_37671095
          Length = 1034

 Score = 1226 bits (634), Expect = 0.0
 Identities = 634/634 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taataaccaactgcattttcctgaaaggtgtgagactcctcccagtatgccctccgtgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 taataaccaactgcattttcctgaaaggtgtgagactcctcccagtatgccctccgtgta 775

                                                                       
Query: 61  aactaacaagacattcccagggagctgcccatacctctgctccagggcgggttagaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aactaacaagacattcccagggagctgcccatacctctgctccagggcgggttagaacca 715

                                                                       
Query: 121 agcttaagctgatagtggaagactctcgggtgtctatttaatatgaagagggtttgactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agcttaagctgatagtggaagactctcgggtgtctatttaatatgaagagggtttgactc 655

                                                                       
Query: 181 ctggatctttatccacctgcgtgggttcagtgatctcaatgggagctccatcttttctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctggatctttatccacctgcgtgggttcagtgatctcaatgggagctccatcttttctag 595

                                                                       
Query: 241 tgatcgcacctctgaagcgatgttataaggccaagaaattgatttcctgggttgcaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tgatcgcacctctgaagcgatgttataaggccaagaaattgatttcctgggttgcaaaaa 535

                                                                       
Query: 301 tcattcccaggtcatcagtgtcaaagccaagtgttttgtggatctcatttttttttccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tcattcccaggtcatcagtgtcaaagccaagtgttttgtggatctcatttttttttccct 475

                                                                       
Query: 361 ttaaagttaaagtgtagtctgttttgtatgttgaaccattaaaggtactaggaattgcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttaaagttaaagtgtagtctgttttgtatgttgaaccattaaaggtactaggaattgcaa 415

                                                                       
Query: 421 gtctatccctacatgtcacggtttaacacacacagcagattgactgactctctccttaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtctatccctacatgtcacggtttaacacacacagcagattgactgactctctccttaac 355

                                                                       
Query: 481 tatggcctgcagcatcgatctccaccaagcaaggagctgaggtccagcagagagaggatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tatggcctgcagcatcgatctccaccaagcaaggagctgaggtccagcagagagaggatg 295

                                                                       
Query: 541 caacggtgagcatgaggttggcagacacctcctgctgccaggtgtccctgggtccaggag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caacggtgagcatgaggttggcagacacctcctgctgccaggtgtccctgggtccaggag 235

                                             
Query: 601 tcccttaggtagtgatatagggccaaggggataa 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tcccttaggtagtgatatagggccaaggggataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |