BAC Information

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BAC

Clone NameMSMg01-216J16
Chromosome7 (Build37)
Map Location 81,951,143 - 81,951,538
singlet/doubletsinglet
Overlap genenone
Upstream geneSt8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308, EG665641
Downstream gene0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171, Akap13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216J16.T7 (MSMg01no216_j16.b1)MSMg01-216J16.TJ (MSMg01no216_j16.g1)
ACCAG396420AG396421
length7341,164
length of high quality
(start - end)		319 (46 - 364)400 (58 - 457)
definitionCHROMAT_FILE: MSMg01no216_j16.b1 PHD_FILE: MSMg01no216_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:40 2005CHROMAT_FILE: MSMg01no216_j16.g1 PHD_FILE: MSMg01no216_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTTTAGCTCTGAGCCTCATTTTTTAATGGGGTTATCTGATTTTC
TGGAGTCTGCCTTCTTGAGTTCTTTATTTATATTAGATATTAGTCCCCTA
TCTGATTTAGGATAGGCAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTT
TGTCTTATTGAAGGTGTCCTTTGCCTTACAGAAGCTTTGTAATTTTATGA
GGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTA
TTCAGGAATTTTCCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTT
CTCCTCTATAATTTTTTCTGTCTCCGCCCCCCACGCGGAGCTCCTTGATC
CACTTAGACTTGACCTTAGCACAAGGAAATAGGAATGGATCAATTCACTT
TCTTCTACATGTTAACTGCCAGTTGTGCCAGCACCATTTGTTGAAATGCT
GTCTTTTTTCCACTGGATGCTTTTAGCTCCCTTGTCAAAGATCAAGTGAT
CATAGGTGTGTGGGTTCATTTCTGGGTCTTTGATTCTATTCCACTGAGTA
TGGGAGATCTTCCCTTCCTCTGAGATCCTCTTTACTTTCCGTCTTCTTAG
ACTTGAATTCCTTCTCACACTGGTCTCCCTCTTCCTCATTTACATTCTCT
CCCTGGTTTTCATTTACTTTGTCACATTGCTTTT

NNNAAAAGCAGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGTGGTAAAGATCAGTTATAGAGCTATCACATAGTTTGGACG
AGGCCCCGTGTTCAACTTCCAGCACAACAAAACCAACAAACGTAGTGAGA
ATACTGTTGCCCCAGAGAAAATACTCACAGTAAGTGCACCTTACCAAGGA
TTATAATCTAAGGTAAAATGTCAGACAGGATGCCTAAAGCTTTGTCAAAA
ATTTCTCAGAGCAAGACAAACAAATCGCCAGGGAACACCTGAAACATTAA
AGTCATGCTTACTTATCAACAAATGCAAATAGAAACCAGGATGAAATAGA
TGGTATTCATGTCCACCGGGAGGATTAAACTACAAACAGCTGACAACATC
AAATAGCAACAGAGACATGGAGTCACTGGAATACCTACTTATTGTTGGCA
GTACTGCAAAATTATCTGAACACTTTAGGAAAAAAAAAGAGAGAGAGAGA
AAGGACTTTCTTATAAAGCTAAAGGTATATAACCCAGCCACTATTCTACT
GTATTTACCCCCAAAGAACAGGAAAATGTAAATACAACAGAAATATCATG
TTTAAAGTTGCTCATAGTTTTACATTCAGTAGACATAAATGAATTGGCCT
ATGTTGTTTATTGACAAGAAAACAGATTTATAAAGCATGTAGTAGAATAT
TTAGTAATAGACTATTATATAATTAAAGAAAAACAAGTTATTGATACTTA
GAATAAGCTTTGCCAAACTATACTTAATGAAAGAAACTTTACACATACAA
AACTTTACATAGAAAACTTTACACATAGAAACTTTACACATGTGTTTCCT
TTTATGCAAAGTACTAATATGGGNCAATCTAATTTGTTGAGAAGATTATT
CAAATTACAATTTTCTGTGGAGGAGGGGCACAAGCGACCGGAGGGCATTT
TGGAAAAAATATAAAAAATTTCACTCCTTAAAAGTAGAATTTTGTAGAAA
AAAATTTGTCCCTTTCCTGGTTTAAAAAAAGGGGCCCCCCCCCCACAAAA
AAAAAATTTTATTGGAAAAAACCTGGCCGAAAAATTTTTTGGGCCCTCGT
CCTGGGGACTTTTAAAACCCCGGACCCGTAAAAACCTCCCATATTTTAAT
TGGTAAATACAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_j16.g1 MSMg01no216_j16.g1 CHROMAT_FILE:
MSMg01no216_j16.g1 PHD_FILE: MSMg01no216_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:40 2005
         (400 letters)



>mm_chr7_81950943_81951738
          Length = 796

 Score =  677 bits (350), Expect = 0.0
 Identities = 386/400 (96%), Gaps = 4/400 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtggtaaagatcagttatagagctatcacatagtttggacgaggccccgtgttcaact 60
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 201 ctgtggtaaagatcagttatagagcgatcacatagtttggacgaggccccatgttcaact 260

                                                                       
Query: 61  tccagcacaacaaaaccaacaaacgtagtgagaatactgttgccccagagaaaatactca 120
           ||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||   
Sbjct: 261 tccagcacaacaaaaccaacaaacccagtgagaatactgttgccccggagaaaatac--- 317

                                                                       
Query: 121 cagtaagtgcaccttaccaaggattataatctaaggtaaaatgtcagacaggatgcctaa 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 -agtaagtgcaccttaccaaggattataatctaaggtaaaatgtcagacaggatgcctaa 376

                                                                       
Query: 181 agctttgtcaaaaatttctcagagcaagacaaacaaatcgccagggaacacctgaaacat 240
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 377 agctttgtcaaaaaattctcagagcaagacaaacaaatagccagggaacacctgaaacat 436

                                                                       
Query: 241 taaagtcatgcttacttatcaacaaatgcaaatagaaaccaggatgaaatagatggtatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taaagtcatgcttacttatcaacaaatgcaaatagaaaccaggatgaaatagatggtatt 496

                                                                       
Query: 301 catgtccaccgggaggattaaactacaaacagctgacaacatcaaatagcaacagagaca 360
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cacatccaccgggaggattaaactacaaacagctgacaacatcaaatagcaacagagaca 556

                                                   
Query: 361 tggagtcactggaatacctacttattgttggcagtactgc 400
           ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 557 tggagtcactggaatgcctacttattgttggcagtactgc 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 796
Length adjustment: 9
Effective length of query: 391
Effective length of database: 787
Effective search space:   307717
Effective search space used:   307717
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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