BAC Information

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BAC

Clone NameMSMg01-216P20
Chromosome7 (Build37)
Map Location 123,955,212 - 123,955,525
singlet/doubletsinglet
Overlap genenone
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993
Downstream geneLOC100043330, Xylt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216P20.T7 (MSMg01no216_p20.b1)MSMg01-216P20.TJ (MSMg01no216_p20.g1)
ACCAG396672AG396673
length7271,101
length of high quality
(start - end)
319 (46 - 364)370 (70 - 439)
definitionCHROMAT_FILE: MSMg01no216_p20.b1 PHD_FILE: MSMg01no216_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:14 2005CHROMAT_FILE: MSMg01no216_p20.g1 PHD_FILE: MSMg01no216_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGTTAGACATGGATACATTGTTTCTAACTACCCATAGGGAGAA
AAGAAGTATAAATGAATTAATGATTGACAAGATAGCATGTAAGGATTCTT
TGTAAGGCAGGAAGTTTCCTTTTCTTACACTTAGGAGAGATGGTAGGAGG
GTTCAGAGCTCAGTCTCTGGAGTCAGTTTTGCTCAGGGTTCCCCCTCAGC
ACCACTCCTGCAAGGGACTAAAACTCATGAATGTCATGTAACTTCTCTGA
CTCAGTTTCCTGATCTGTAAATGGTATGAATGTATGGTCTGCAAACTGGC
TTGCTTAGAAATCTTTTTTATGGCCCCCCCCCCCCCCTACTAGATAAGTT
TGGTCTAAATGTCATTGTTACCCCACAGGAGAAACATGATATTTAATACA
TTAGTGGGAGTTTGTGAGTTTGTGTGTGCTTTCTGTGTCAGCCAGCTTTC
CATTGCCATAACAAAATACCCAGGAAAAAACTGTGAGAGGAAAACTTAAT
TTTGGCTCAGGGCTTCCGAGACTTCAGTCCATGGTCCCTTGGCTCTGCTC
TCTTCACAGAGACTGTAGTGTGGCGCGCATCTTGGGAGGGTAGCGTGTAC
TACAGCATAGCTGTTTGCTTCATGGTGGTCAGGATCGCATGGTAAGGCTT
TGCAAGAGGTTGTACCTGATATATCTT
NTTATACCATGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGCTCAACATCCTTAACCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCCCAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTC
TGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGTCAGAAGCTTT
TTTTTTTACCCCCCCCCCCCTCAANAGAGGAATGGATACAAAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGA
TATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCTAAA
CACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTATGCCCCT
CCTTAGAAGTGGGAGCAAAACACCCTTGGAAGGAGTTACCGAGACAAAGT
TTGGAGTTGAGATAAAAGGATGGACCATGTAAGACACTACCATATCCGGG
GAATCCATCCCCATAATCAGCTTTCCAAATGCTGAACCCCTTTGTCTTAT
CCTAACCAAGAATTATGCCTGAAAAGGGAACCCTGGAAAATAAGTGGTCC
CTTTTGGTCAAAAAAAATGTCCCCTGGGGCCCTTTTTCAAATTCTTTTTT
AAAATGGGGGAGGGTCTTTCACCAATTTGGGTGTTTTATTGGGGATGGGG
AAAAACACCACTTGGGGCTCCCCCTCCTCTCTGGTGAATGAAAAGTTCCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_p20.b1 MSMg01no216_p20.b1 CHROMAT_FILE:
MSMg01no216_p20.b1 PHD_FILE: MSMg01no216_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:14 2005
         (319 letters)



>mm_chr7_123955008_123955726
          Length = 719

 Score =  545 bits (282), Expect = e-159
 Identities = 306/314 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggttagacatggatacattgtttctaactacccatagggagaaaagaagtat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggttagacatggatacattgtttctaactacccatagggagaaaagaagtat 264

                                                                       
Query: 65  aaatgaattaatgattgacaagatagcatgtaaggattctttgtaaggcaggaagtttcc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 aaatgaattaatgattgacaagatagcatgtaaggattctttgtaaggcaggcagtttcc 324

                                                                       
Query: 125 ttttcttacacttaggagagatggtaggagggttcagagctcagtctctggagtcagttt 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttcttacacttaggagaggtggtaggagggttcagagctcagtctctggagtcagttt 384

                                                                       
Query: 185 tgctcagggttccccctcagcaccactcctgcaagggactaaaactcatgaatgtcatgt 244
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctcagggttccccttcagcatcactcctgcaagggactaaaactcatgaatgtcatgt 444

                                                                       
Query: 245 aacttctctgactcagtttcctgatctgtaaatggtatgaatgtatggtctgcaaactgg 304
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 445 aacttctctgactcagtttcctgatctgtaaatagaatgaatgtatggtctgcaaactgg 504

                         
Query: 305 cttgcttagaaatc 318
           |||| |||| ||||
Sbjct: 505 cttgtttaggaatc 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)