BAC Information

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BAC

Clone NameMSMg01-217H15
Chromosome7 (Build37)
Map Location 149,885,652 - 149,885,967
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2
Downstream geneEG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217H15.T7 (MSMg01no217_h15.b1)MSMg01-217H15.TJ (MSMg01no217_h15.g1)
ACCAG396991AG396992
length763728
length of high quality
(start - end)
324 (40 - 363)49 (196 - 244)
definitionCHROMAT_FILE: MSMg01no217_h15.b1 PHD_FILE: MSMg01no217_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:02 2005CHROMAT_FILE: MSMg01no217_h15.g1 PHD_FILE: MSMg01no217_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AAAGCCTAGGAACTATAGTGTATTTCATGAGATTGGGAGCAAAAGCTAAA
GACTTGGATAGATCCTGCATGGCATTTGGGGGCTGTGGGAGACCCAGAGT
GACCCAGCCTTTGATGGGTTCCTAGCATCTGGGCTGTACAAGAAGGAATT
TTTAAGTGTCGTTGTCCCATGTTCTCTGCTGTCATTTGGCTCTATGTTTC
TGTCGTTGCTTTGGCCTTATGTCTGGTCTATCTTTGTGTGTTCTGACTTG
GGATGGTATGGAGCCCTGCATCTTTGACTCCCGTAAGCCAGGCACCAATG
GTTACCACCTTTTTCTTCNCTCCCCGGNNTCGNTGCCCTGAGGTTGGATC
ATGCTAACTGCAAGCTGCTCCCCCCACAAAAAAAAAAAAAAAATGGGGGA
GTTTGTGGGCAGCACTCACTCCTAGCTTTCTTTCCTTCTATGCTTTCTTA
TTATTCATTACCCTTTGCTTTCTTCTCACCTTTTTCGCCCTCTCCGCTTG
TTTTCTTTTTTACCATTCCTATCTCCCCTTTCGTTTCTTTTCTTTTCCCT
CCTTCCTTTTTTCCCGCCTTTCCCTCCTTTTCTTTTTCCCCCTTCTCTAT
ACCGTTTTTTTCTTATCTTTCTCTTTCTTCCTCTCTTTTCCTTTTTGGCT
TCCCCCCCTTTTTTCCCTTCTTCTCTTTCCCCCCTCTCCTTGTTTTTTCT
CCCGTTCTCTCGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGCCATTCAATAGAAGCATGCACACAGGAAGACCAAAAGG
TGCCTGACAGATGAAGGTTTACCCACTCACCCTGTTTTGGATTCTACACA
CACAAACACACACAAACACACACAAACACACACACACTCACACATACACA
CACACACACACACACACACACACACACACACACACATACAGATCATAAAC
ACCACCTTGGTCTAAGATTCCAAGTTCTGTCCTTCTTCATGTCCCCAGCA
TCCCATAAAAAACCCTCTTCTTCTGCCCTGCCCTAGTTTGGAACCCCCTA
GTGAATGTGCCATTATTCCCTCGCCTGCCTCAAAGGTCACCATACTCCTG
CCATCTCACAACATGGAGTCACACTGCACACAACATCTCTCACCTGCTAA
TCTTCTTTGATCCCTGACAACCTCTACGTCAGAGACATCATGATGTCCTC
AGTTGCTCATAAGCGGCCCAGGATAGGTCAAAGGCAAGTCTTGCTTCTGG
TGTCAATTTAACCCAGTGAGAATATGCAAGAAACAGCCCAGCCGTGTTAA
GTCTGCCATGGACAGGAGTCTCTCATGTTGTTGTCCCCTCTGTCTCTCTT
ACATCTTGCAGGACACTCCGTTGCTAGGATTAGTGCCCAGATTAACCCAC
CAACTTTCCAGAGCCTGGCATTGTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_h15.b1 MSMg01no217_h15.b1 CHROMAT_FILE:
MSMg01no217_h15.b1 PHD_FILE: MSMg01no217_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:02 2005
         (324 letters)



>mm_chr7_149885448_149886171
          Length = 724

 Score =  565 bits (292), Expect = e-165
 Identities = 310/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaagcctaggaactatagtgtatttcatgagattgggagcaaaagctaaagac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 520 gaattccaaagcctaggaactatagtgtatttcatgagattgggagcaaaaactaaagac 461

                                                                       
Query: 65  ttggatagatcctgcatggcatttgggggctgtgggagacccagagtgacccagcctttg 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttggatagatcctgcatgggatttgggggctgtgggagacccagagtgacccagcctttg 401

                                                                       
Query: 125 atgggttcctagcatctgggctgtacaagaaggaatttttaagtgtcgttgtcccatgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atgggttcctagcatctgggctgtacaagaaggaatttttaagtgtcgttgtcccatgtt 341

                                                                       
Query: 185 ctctgctgtcatttggctctatgtttctgtcgttgctttggccttatgtctggtctatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 340 ctctgctgtcatttggctctatgtttctgtcgttgctttggccttatatctggtctatct 281

                                                                       
Query: 245 ttgtgtgttctgacttgggatggtatggagccctgcatctttgactcccgtaagccaggc 304
           ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||
Sbjct: 280 ttgtgtgttctgacttgggatggtatggagccctgcacccatgactcccgtaagccaggc 221

                           
Query: 305 accaatggttaccacc 320
           ||||||||||||||||
Sbjct: 220 accaatggttaccacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)