BAC Information

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BAC

Clone NameMSMg01-217L17
Chromosome7 (Build37)
Map Location 57,719,731 - 57,850,255
singlet/doubletdoublet
Overlap geneNell1
Upstream geneDbx1, Htatip2, Prmt3, Slc6a5
Downstream gene4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971, LOC668779, Tmem16e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217L17.T7 (MSMg01no217_l17.b1)MSMg01-217L17.TJ (MSMg01no217_l17.g1)
ACCAG397156AG397157
length710717
length of high quality
(start - end)		248 (43 - 290)317 (377 - 693)
definitionCHROMAT_FILE: MSMg01no217_l17.b1 PHD_FILE: MSMg01no217_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:28 2005CHROMAT_FILE: MSMg01no217_l17.g1 PHD_FILE: MSMg01no217_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,850,052 - 57,850,255)(57,719,731 - 57,720,047)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTAGACAGACTTACAATATAGAATATAAACATAATAACTCACATATAT
GTTATATAAGTATATATTCATACCTATATATTCAGATCCCTAGTACTCAT
TTAAATGCTAGATGGGTGTGGTAGCTCAACTATAATTATAGTACTCTTAA
AGTAGGTTAGATCCTGGGGCAAGTTGGCTAGCTAGACTTGCCATACTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATACTAT
ATATATACACACATATATATTTTTATATAGATAGATTACGCACACACACA
CACACACGTTTTCATGATTTTACCCCCCCCCACCCACACATATATAATGT
GTGTAGAGATGTGGTGATNNNCGCTCAAAAAAAAACAAAGATGGTTTGAG
TTACCCATGTACCTGATAAGTGATGAACAACAGAGGTACTTCGGTACAAC
TATCACACAGGCCTAGTATCATATGGAGGAAGGTGAGAGAGAGGCTTTCT
GACGTGCACACAAGACTGATTTTCCTGTCCGTGGTGCTAAGTTTCCCTGG
TCGCTTGTCTTATCCTACAGATTAGATCTTCCGGGGATAGATGTTTATGG
CTTCACATTTTCGAGCCCCCATTTTTAATTTCTTATCTCCTGGTTTTTTT
GGGTACCTGG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCAAAAAAAGTGAACTATA
GAAGGATTTGCCGAAAACAGTAGAATTTGGTGACTGGCATGTGTCTATCG
GTATGAGCATCTGAAGTCCTGGTTCTTTCTTAGTGCATTCATTAACTCAG
TGGTTTGTCAACAACAGAAAGGGACGTCTTCTCACTCAGGCAGAAACTTC
TAGATCAAAGCAACTGCAGATTTCATGCCTAGAAAGGACATATTTGTCAC
TTGATCTTTACATGGTGCAAGGGGTGAGGGACCTTCCTAGATGTCTTGTA
TAAGGGCACTGATGATCTATTTGTATCCCTGAGGCTTCACCTATGGAATG
AATTCCAGGATGTAGCACATGTGCAACTCACTACAGATGTTCTCTTGTCC
TTTGGTACCTAGCACCTGACATCACATCTTACCACTTGGTATGATACAAG
CTCTTCTGGCAGAATTTCCAGAACCAGAGCGGTTGCCCAGGTTTTTATGC
ACCAGGGTTGAGACAAAGATATTGAGCAGAGACACAAAACACCAAGGGTT
TCCTCGGTAAAGTGGCCTTTAAATCAGAGTCAGGAAATGGCCTCACGTAG
CTCTCGCCAATAGTCCACCAGATGAATTGCGCCAAGGCTATATATAGTTT
TCTTTTCTTTGGTGGACCTTGGCAGATTAAAGTTTCAGTCAGAGGGGTTG
GGATTACAAATTAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_l17.b1 MSMg01no217_l17.b1 CHROMAT_FILE:
MSMg01no217_l17.b1 PHD_FILE: MSMg01no217_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:28 2005
         (248 letters)



>mm_chr7_57849853_57850500
          Length = 648

 Score =  348 bits (180), Expect = e-100
 Identities = 198/204 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagacagacttacaatatagaatataaacataataactcacatatatgttata 64
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaattattagacagacttaaaatatagaatataaacataataactcacatatatgttata 344

                                                                       
Query: 65  taagtatatattcatacctatatattcagatccctagtactcatttaaatgctagatggg 124
           ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 343 taagtatatatgcatacatatatattcagatccctagtactcatttaaatgctagatgtg 284

                                                                       
Query: 125 tgtggtagctcaactataattatagtactcttaaagtaggttagatcctggggcaagttg 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 283 tgtggtagctcaactataattataatactcttaaagtaggttagatcctggggcaagttg 224

                                   
Query: 185 gctagctagacttgccatactctc 208
           ||||||||||||||||||||||||
Sbjct: 223 gctagctagacttgccatactctc 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no217_l17.g1 MSMg01no217_l17.g1 CHROMAT_FILE:
MSMg01no217_l17.g1 PHD_FILE: MSMg01no217_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:28 2005
         (317 letters)



>mm_chr7_57719531_57720247
          Length = 717

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcactacagatgttctcttgtcctttggtacctagcacctgacatcacatcttaccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcactacagatgttctcttgtcctttggtacctagcacctgacatcacatcttaccact 260

                                                                       
Query: 61  tggtatgatacaagctcttctggcagaatttccagaaccagagcggttgcccaggttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtatgatacaagctcttctggcagaatttccagaaccagagcggttgcccaggttttt 320

                                                                       
Query: 121 atgcaccagggttgagacaaagatattgagcagagacacaaaacaccaagggtttcctcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcaccagggttgagacaaagatattgagcagagacacaaaacaccaagggtttcctcg 380

                                                                       
Query: 181 gtaaagtggcctttaaatcagagtcaggaaatggcctcacgtagctctcgccaatagtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaagtggcctttaaatcagagtcaggaaatggcctcacgtagctctcgccaatagtcc 440

                                                                       
Query: 241 accagatgaattgcgccaaggctatatatagttttcttttctttggtggaccttggcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 accagatgaattgcgccaaggctatatatagttttcttttctttgttggaccttggcaga 500

                            
Query: 301 ttaaagtttcagtcaga 317
           |||||||||||||||||
Sbjct: 501 ttaaagtttcagtcaga 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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