BAC Information

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BAC

Clone NameMSMg01-217N02
Chromosome7 (Build37)
Map Location 147,104,779 - 147,104,948
singlet/doubletsinglet
Overlap geneKndc1
Upstream geneEG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229
Downstream geneUtf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217N02.T7 (MSMg01no217_n02.b1)MSMg01-217N02.TJ (MSMg01no217_n02.g1)
ACCAG397212AG397213
length775823
length of high quality
(start - end)
173 (46 - 218)---
definitionCHROMAT_FILE: MSMg01no217_n02.b1 PHD_FILE: MSMg01no217_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:36 2005CHROMAT_FILE: MSMg01no217_n02.g1 PHD_FILE: MSMg01no217_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTAGACAACTGTGGTTAACACTAGCTTCAGCATCGAGGGCCCTA
CTGTCCTCCACCCTAACCCCTGCCAATGTGAGTAGGCCTGACCATCGTGC
AGTTACCTTGATGGCCTCGGCTGCAGATGGCCGTTCTGAGGCATGCCGTC
TGGCCATGTCCAGAAGGAGTGCTTTGAGTCTATTTTGTTTTGTCCAGTTT
GTGGTCTCGGTCTACGCTGAACTTGGCTGCTGTCCACAGAACTGCAGCCA
CACAGTACACAGACCCCTGTTTTTTTGGTCAGACAGGACAGAGAGGTAGT
AAGAGTGTTTTAAGTGGTTTTCCCCCAGACGGAACACCTATAATTTTTGG
GCTTATTATTTTTTCTTTTTTCCCCCCCCCCTTAAAAAAAAAATCTTCCT
TTTGCGCCCCTCTTTCCTTTCCCTCTTATACCCTCTCTCTTTTTCTTTCC
TTTTTCCTCTTTTCTTTTTCCCCTTTTCCCCCTCCCCTATTTCCTTTTTT
CTTTTTTTCTTCCCTCTTCTCTTTCTTCTTTCCTTTTTTTTATCCCCGTT
ATCTCTCTCCCTCCACTCTCTTTTTTTTTTCCCCTTTATGTTCCTCTTTC
TCCTTTTCCCTTCTTTTTTTTCCGCCCCTCTTTTTTTTCCTCTTCTCCCA
TCTCCGTTCTTTCCTTCCTTGTTCCCTCCTATCCTTTTTTTCTTTCCCCC
CCTCCCCTTGTCTTTTTTTCTTTTT
GGAAGGGGGGTTTTATTAAGGTGTACTTCTAAGATGCCTTTTGTGGTAGG
TAGGGAAGGAGGGTGATAGTTTGTGGGTGGGGGGGGAGGGGGTTTTTTGT
TTATTCTTTATGGTTCAGGAGTGAAGGGGTGGGGGGGGGGGGGGGTGGAG
AGAGGGGAGGGGAGAGAGAGGGGGTAAAGAAGAGTAGATGGGTATGTATA
ATATTATATGAAATAATCGAAGTGTATAGTGATTTTAGGTGGGGGGTGTG
GTTAGGAGGGGAGGGAAGGTGGAGGGAGGTGAGAAAGAAAAGGAAAGTGT
TTGTTTGTGGGGAGGGAAGGGGGCGGATTGAAATCCACCGTTTTGATGGT
TCTCCCCCCCGCCCCCGCAGGGAAGTAGGATGAGTTGGGGAGGGGGTGGC
CCCCCGGGGGAAAAAATGAGAAAAGATTGTGGGGGGGGGGGGGGGGGGGG
TTTGTGTTCGTGGAAGGGGAGGAGTTATGGGATTCTGGGGGTTGTGGTTT
GAAGGTTTTATGTGTGAGGGGGGGAGACCGATATATGATTTTTAGACTTA
AAAGATATATAAATATTAGTTGTGGGATGGACACGTATGAGTGTCGGTTG
TGTTTGAGTTACGTGCTTAAGAGAGGGTAGAGGGATTATTTGGAGTCTTT
TGTCGTTAAGGGCATGGCAGTAGGCTATAGGTGTGGGGGTTAATTTATTG
GTGTATTTTAGTGAAGGGATTGGGGTAAACGTAAAAGACAGAGAGGTTGC
GGATAAGCGGGGTCGGAAATTGGTTTGGGGTGAGGGTGCAGTGGGGGAGT
AGGGGGGGTTGGGTGGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_n02.b1 MSMg01no217_n02.b1 CHROMAT_FILE:
MSMg01no217_n02.b1 PHD_FILE: MSMg01no217_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:36 2005
         (173 letters)



>mm_chr7_147104576_147105148
          Length = 573

 Score =  306 bits (158), Expect = 6e-88
 Identities = 167/170 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtagacaactgtggttaacactagcttcagcatcgagggccctactgtcctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggaattctgtagacaactgtggttaacactagcttcagcatcgagggccctactgtcctc 314

                                                                       
Query: 64  caccctaacccctgccaatgtgagtaggcctgaccatcgtgcagttaccttgatggcctc 123
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caccctaacccctgagaatgtgagtaggcctgaccatcgtgcagttaccttgatggcctc 254

                                                             
Query: 124 ggctgcagatggccgttctgaggcatgccgtctggccatgtccagaagga 173
           ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 253 ggctgcagatggccgttctgaggcatggcgtctggccatgtccagaagga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)